BAC Information

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BAC

Clone NameMSMg01-446K10
Chromosome10 (Build37)
Map Location 64,817,478 - 64,817,948
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3
Downstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K10.T7 (MSMg01no446_k10.b1)MSMg01-446K10.TJ (MSMg01no446_k10.g1)
ACCAG535295AG535296
length729742
length of high quality
(start - end)
474 (61 - 534)193 (119 - 311)
definitionCHROMAT_FILE: MSMg01no446_k10.b1 PHD_FILE: MSMg01no446_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:15 2005CHROMAT_FILE: MSMg01no446_k10.g1 PHD_FILE: MSMg01no446_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCACTATTTCAGAGGAGCCGCGGAATCAAACTCAG
TACTCAAGCTTGGCTGGCAAGAACTGTATTGACTTAGCCATCTCTTCAGG
CTCTTATATATATATGTTTTCAACATTTTTGTAGCACCATTGAAAATAAG
TTAATTCAATTATATAGTTTAATAACTTAAAACAATATTATTTTACCCAT
TAGCTAACATAATTATTACTAATGATATTCTGTCCATTACTTTGTTGTAC
TAAGTATTTAAAATTAATCATTGATTTCACACTGTGAACATCTGAAACCA
GAGTGATTCTTTTTCTAACTGCTGAGTGTCTATACAGTGCAGTAGTTAAT
ATATCAGACAGGAAAGACTAGAACAATTGAAAGATTCCAGAACTGTTCAC
GAAGCCTGAAATCTGTTTCTTTCAAAGAGCCCAGGCCATTGTGAATTAGG
AAATCAGTTGAGGGATAGTAGGAATTGCAAACAAACAAACAAACAAACAA
ACAAATAAATAAATAAATAAATAAATAAATAAACTAACAAACAAACCTGA
GAGAACCTGGATGCAAGTTTCTGCTCCCTGATAATTCCTCAGTGGAACTT
CCCTTTCCGACAGTCTAATTTCTATGGTTCCACAGCAATTTCTATCTTGA
TTTTGAAATGTATTTTCTCTGTAGCCGAATCCATTTCCCATGTTTATTGA
TGTTTCTAATGCGGTATTTTTAATGGCAA
GTTAGGCCTGGAGGCCGCCTGGNTTCAGTAGTCGGGGTGACACNATAGAA
GGTTTCAGAAAAACTGAGGNTTAAAAAGTGCAAATTTTATATCTACTGCC
TAAAGAATTTATGACTACAAATGAGACTAGAGAAGGTGCCTTGCACTTCT
TAATAATGTGGGTTTGAGGCCCTTTATTTGATCGTAATAGCAGGTGTTCT
TTTTTTTTTTAAGATTCAAGGTCATTATTTATTTGTTGCTCTTATTGACT
CATTTCTGACTGGACTCAGACTTGGAAGTAGAAGCTCTCAGCAAGGACAG
CCTACGTCTCTTTGCTTTGTGNTCCTGGCGCTTTTCTTTGGCTTCCTTCA
TTCTCTTGGCCAAAAGTTTAACGTAATTCTGCAGCCTCCTCCTTGTTCTT
CTTAGTGCGTTGCTTCTTCAGAGCATTACGTTGGCATTTGTGTTGCAGGA
CGCATGCAGTAACAAGACCCTGGATCTTGGGTGCTTTGGTCCTGGGCTTC
TTACCTTCTTTGTTTAAGGGCTTCCTGACAACTTACTGGTAGACATTCAT
CTTCTTCGGAGATATCTAAAAGCGTTCAGATTCTTACTCCCCCTTTACGT
CCCTTCTGACGAGGTTCAGTACTATCCCGTCAACTCAGGAATAACCTTTT
TTTTTTTTCTTTTACATAACCTAGTCCTCTCATTCTTGTCCTTTACTTTC
CTCTTTCTGCCTTCTTATATCTGAATCTGGGACTTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k10.b1 MSMg01no446_k10.b1 CHROMAT_FILE:
MSMg01no446_k10.b1 PHD_FILE: MSMg01no446_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:15 2005
         (474 letters)



>mm_chr10_64817278_64818149
          Length = 872

 Score =  857 bits (443), Expect = 0.0
 Identities = 465/473 (98%), Gaps = 2/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctggcaagaactgtattgacttagccatctcttcaggctcttatatatatatgtttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 tggctggcaagaactgtattgacttagccatctcttcaggctcttatatatat--gtttt 258

                                                                       
Query: 61  caacatttttgtagcaccattgaaaataagttaattcaattatatagtttaataacttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caacatttttgtagcaccattgaaaataagttaattcaattatatagtttaataacttaa 318

                                                                       
Query: 121 aacaatattattttacccattagctaacataattattactaatgatattctgtccattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aacaatattattttacccattagctaacataattattactaatgatattctgtccattac 378

                                                                       
Query: 181 tttgttgtactaagtatttaaaattaatcattgatttcacactgtgaacatctgaaacca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 tttgttgtactaagtatttaaaattaatcattgatttcacactgtgaacatctgaaccca 438

                                                                       
Query: 241 gagtgattctttttctaactgctgagtgtctatacagtgcagtagttaatatatcagaca 300
           ||||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gagtgaaccactttctaactgctgagtgtctatacagtgcagtagttaatatatcagaca 498

                                                                       
Query: 301 ggaaagactagaacaattgaaagattccagaactgttcacgaagcctgaaatctgtttct 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggaaagactagagcaattgaaagattccagaactgttcacgaagcctgaaatctgtttct 558

                                                                       
Query: 361 ttcaaagagcccaggccattgtgaattaggaaatcagttgagggatagtaggaattgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcaaagagcccaggccattgtgaattaggaaatcagttgagggatagtaggaattgcaa 618

                                                                
Query: 421 acaaacaaacaaacaaacaaacaaataaataaataaataaataaataaataaa 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acaaacaaacaaacaaacaaacaaataaataaataaataaataaataaataaa 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space:   399968
Effective search space used:   399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)