BAC Information

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BAC

Clone NameMSMg01-446O21
Chromosome10 (Build37)
Map Location 50,912,798 - 50,913,244
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1
Downstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446O21.T7 (MSMg01no446_o21.b1)MSMg01-446O21.TJ (MSMg01no446_o21.g1)
ACCAG535507AG535508
length1,306757
length of high quality
(start - end)
---467 (65 - 531)
definitionCHROMAT_FILE: MSMg01no446_o21.b1 PHD_FILE: MSMg01no446_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:36 2005CHROMAT_FILE: MSMg01no446_o21.g1 PHD_FILE: MSMg01no446_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGATACAATATAGTCTGCACTGCTTCCTCTAATAAAGAGTGGCGATATA
GGTATGGTATATTACCACGACACATATGAGAGTCCGACGCGCATNGATCT
CTATGGTGCGTGTGCTGTGCTGTGTACCGCATGATGACATGCCAGACACA
GACCAACCAACCAATGAAATAGCGCAAGAAAGGAGAACACAGCTGAGTGA
GAACCAGATGAATATCACGATTAGCTATATGATATCAGCTATATAGTAGT
CTATATAGCACGCAGCGTATGTAGTGCGACACGAGCGCCGCGCATGTANC
ACACACCGAATGTATTGTCGTAGCGGAGCTCGTTNGTATCTGTTCGTCGC
ANCTGGATACTATCTGCGGTAGAAGTCTCATGCGANGTATGAGATACCGA
AGNCCTCGGTATACACGACGAATGAGNTGATGTACTCGCACTAAGACAGT
CTGTTCTGCGTCTACTACGTCGCATGTCGGGTGCACCACTCCACTAATAG
AGTGGTATGATAATTAGTCGATAATTGATATGATGGTGCCGAGCGTNGTC
ATAGAGAAGACAATAAGCAGCTCGGACATCTCGTGCTATATATTGCAAAT
CATAATCATAGCGACCGGCGCCGGCGGCAATAGATACGTAATCGATACGA
TATATATGCGATGACATATGCTATGCGGACGAAGTTCGTGAACGTATAGC
CGTACTATTATATTTAGATATGATGAGACGGCTACNACACCAGACTCAGG
CATATCTNGACACGAGCTGCGCAATGAGTGATATTACTCGCGATTCGTGC
GATTATCGTCGAGCTNGCGTTCAGGGAGCGAGANAATCACAAACACATCA
CATCATCGTGCGCTGACGCGTACAGTGTGAGTAAGTACGACACGAATACT
AGTAACACACGAGAGCACACGTGACGCGACGACTGCTATATAGAATCGAT
AATCACCGCCTTTCACTGTACCACCCAGTCGAGTATGAGCGCACGATCAT
NGTTGTCGCGAGGAGTATACGCGACGACGCTCACACGCCCTCGTATAATA
TACACAGTATTCGTCAACTCTCGTATGNATATACGTATGGTTGTAGCCGC
GGCGCGCATCTATAGTACGCGCACAACANCAACCCGTCTTCGTCGTGCGC
ATCAGCGATATGTATCTCGCGCGTCGATGATANTATGTGACCAATATACC
CGCACGTCATGACTGTATAGCACCGCGCCGCGCGCGTCTCTGTGCGAGCT
GAACACTATTGTTGCCTACTCAATGTGGCGCGTGCACAGACAGCAAGCAC
TATATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTAGTAAGAGAAACCGAAATGGAAAGATGGGATGGC
AGCGTGGATTGATACATCTTTGAGGTGGGTTATGCCAGGCATTTAAGGCC
CAGAAACCAGGAATAGACAATGCTATCCAAAAATTTTCTGAAATTAATGC
CAACAGCTTTCATTACCAAAATGGAAAACCCGTCATAGAGAATCAGCAGA
ATTTAAACTTGATACTGCAGACCTGGAGCATTCACTTGTCAACCAATTAT
CGAGTATTTTCTTGCTGTCCTTGTAAGATGCAGAGATAAACAAAGCTAGT
ATCTGTCTTCAGAAACTATATCTTCTAAGGAACAAAAGGAACAAATGATA
AGAAAGCCCATAATCCTATTAGAGAGAAATTCAATCATGATCTCTCTCTC
TGTCTGTCTGCATCTCTGTCTCTATCTCTGTCTTTCTTTCTCTCTCTCTC
TCCCTGTGTGCGTGTGTGTGTGTGTGTGTGTGTATCTATACCCTTCTTCT
CCCCCTCCCTCTTTTTTGCCCTTTTTTTCCCTCTTTTTCCTCCCCCCCTT
CTTCTTCCTCTCCCTCCCCATTCCCTTCCCCTTCTTTTTTTCTCCTCTTC
TCCTTATCCTTCTTTTCTCCTTTCCATATCCCTTTCTCCCATCTCCCCTA
TTTTTTTCCTTTCTCTTTTACCCTCCACTTCTCTCCCCTTCCTTTTTCTT
CATTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_o21.g1 MSMg01no446_o21.g1 CHROMAT_FILE:
MSMg01no446_o21.g1 PHD_FILE: MSMg01no446_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:36 2005
         (467 letters)



>mm_chr10_50912668_50913535
          Length = 868

 Score =  733 bits (379), Expect = 0.0
 Identities = 427/451 (94%), Gaps = 17/451 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagtaagagaaaccgaaatggaaagatgggatggcagcgtggattgatacatctttgag 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctagtaagagaaacccaaatggaaagatgggatggcagcgtggattgatacatctttgag 518

                                                                       
Query: 61  gtgggttatgccaggcatttaaggcccagaaaccaggaatagacaatgctatccaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 517 gtgggttatgccaggcatttaaggcccagaaaccaggaataaacaatgctatccaaaatt 458

                                                                       
Query: 121 tttctgaaattaa-tgccaacagctttcattaccaaaatggaaaacccgtcatagagaat 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 457 tttctgaaattaactgccaacagctttcattaccaaaatggaaaacccgtcctagagaat 398

                                                                       
Query: 180 cagcagaatttaaacttgatactgcagacctggagcattcacttgtcaaccaattatcga 239
           | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 397 ctgcagaatttaaacttgatactgcagacctggagcattcactcgtcaaccaattatcga 338

                                                                       
Query: 240 gta----ttttcttgctgtccttgtaagatgcagagataaacaaagctagtatctgtctt 295
           |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtaaggg----cttgctgtccttgtaagatgcagagataaacaaagctagtatctgtctt 282

                                                                       
Query: 296 cagaaactatatcttctaaggaacaaaaggaacaaatgataagaaagcccataatcctat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cagaaactatatcttctaaggaacaaaaggaacaaatgataagaaagcccataatcctat 222

                                                                       
Query: 356 tagagagaaattcaatcatgatctctctctct------gtct--gtctgcatctctgtct 407
           ||||||||||||||||||||||||||||||||      ||||  ||||||||||||||||
Sbjct: 221 tagagagaaattcaatcatgatctctctctctctctgtgtctctgtctgcatctctgtct 162

                                          
Query: 408 ctatctctgtctttctttctctctctctctc 438
           |||||||||||| ||||||||||||||||||
Sbjct: 161 ctatctctgtctctctttctctctctctctc 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)