BAC Information

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BAC

Clone NameMSMg01-447F22
Chromosome10 (Build37)
Map Location 128,554,406 - 128,730,875
singlet/doubletdoublet
Overlap geneOlfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749
Upstream geneBaz2a, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769
Downstream geneOlfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447F22.T7 (MSMg01no447_f22.b1)MSMg01-447F22.TJ (MSMg01no447_f22.g1)
ACCAG535842AG535843
length747772
length of high quality
(start - end)		437 (51 - 487)361 (80 - 440)
definitionCHROMAT_FILE: MSMg01no447_f22.b1 PHD_FILE: MSMg01no447_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:14 2005CHROMAT_FILE: MSMg01no447_f22.g1 PHD_FILE: MSMg01no447_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(128,554,406 - 128,554,830)(128,730,515 - 128,730,875)
sequence
NNNNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAAAGTTTACCTCTGTTTGCTCTCTGACTGCCTTTTGAGA
ATATGGTAAAAATATATCACAATCATACTTGCTGTTTGACGGTGACTCAT
TGGAGGTCCTTGAGAGAAGCACAACTTGTGAAGCAGTAGCTGGTGAGGGG
ACTTGTATGTGTTCTGTCTGCAGTCACACTTCACCATCTCACCACAGACG
CCAAGTCTTCACATAAGCATACAACTCTCTCCTCTCCTCACAATGCTCAG
TTGTAAGTTAGATTTTCATTGCTCCTTCTAGGATGAGGTCAGTCTTAATA
CCCTTCCCTCTTGTCACATCTAAAATTACATCTTACACTAGATTTATTAG
CACCCTTTCTGTTGAAAGAGTCGGTGATACAAAGGATCAGGAAAATTTCC
AGCTTGCCAGAAATGGGGGTGGNGTGGGGAGGGAGNANANACAGGNTTCC
CTGGAATTTCTGTGACTGCAGNATTTGGTTTATGTTGCTCCCAGCCCACA
CAGAATGACTGTATGAGCACCCACAGTCCTTGTTGAATCTATTTCACAAA
TTACTAACAACTTGATGGCGCCTTATTCCCCCCCGTGTAAATTTGCCTCG
TCCCTTAACATGCCTTCCACCACTCTGCAGTTGCCTTAATGTTTTTCGAT
TCCTCGATGTATTATATCCCCGCGCGTCTCTTTCCCTTACGCTACCA

NNNCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGGTGGCTCTTAACACTT
TCCAAGCAGTGAAACCTATGCCAAACAAATTCTTTGCTTTATTTGGAAGA
GCTGAGATAGTCATTCACTATGTGGCAGGTTGAATGTGGTAGGTGAGTTG
AGTGGTTTTCAGACTAACAGCAACTCAGGTGGAATTTCAGGCACAATACA
AGCCTGATTCCTCCTTATTACTTATGCAGAAATCTTTATAATACCCATAA
GAGTTTTAAATCTGTATAAAAGGTAATATCCAACCTGATATATTTTCTTG
AAAGATGATCTGATTATATGTTGCACCTGAGTTATTTATTTACTCTTTGA
ATATTTATTGTGGGTTCACTATGTGTGTGCAAGAGGACCTGGCACAGAGA
AGAAGAAAAACTTTAGTATAATATTTGGGGAGATTTTTACTTCCCTTATN
GAATACCTTTATCTATTCCATTATAATATAAACACATTGGAGGGTTTCTT
CCTCCCACTTAAAAATGGTAGAGAATTGACTAAGGCCTCCCTTTCTCAAG
GAGGTTCACTTTTTAAACCCTCCCAGGAAAACAAAATTCTCCTCGGAAAA
CTGGGCATCCCTTTAACGACCGAATCTCCCTTTCCGGCTCTCTCCGCTTA
ATATCCTCTTTAAAACTTTAATTTTCGTGGTGTTATTTTCCTTATATCTA
CTTTTTTTTCTCCTTTTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_f22.b1 MSMg01no447_f22.b1 CHROMAT_FILE:
MSMg01no447_f22.b1 PHD_FILE: MSMg01no447_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:14 2005
         (437 letters)



>mm_chr10_128554202_128555038
          Length = 837

 Score =  793 bits (410), Expect = 0.0
 Identities = 421/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaagtttacctctgtttgctctctgactgccttttgagaatatggtaaaaata 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaagtttaaatctgtttgctctctgactgccttttgagaatatggtaaaaata 264

                                                                       
Query: 65  tatcacaatcatacttgctgtttgacggtgactcattggaggtccttgagagaagcacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatcacaatcatacttgctgtttgacggtgactcattggaggtccttgagagaagcacaa 324

                                                                       
Query: 125 cttgtgaagcagtagctggtgaggggacttgtatgtgttctgtctgcagtcacacttcac 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgtggagcagtagctggtgaggggacttgtatgtgttctgtctgcagtcacacttcac 384

                                                                       
Query: 185 catctcaccacagacgccaagtcttcacataagcatacaactctctcctctcctcacaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catctcaccacagacgccaagtcttcacataagcatacaactctctcctctcctcacaat 444

                                                                       
Query: 245 gctcagttgtaagttagattttcattgctccttctaggatgaggtcagtcttaataccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctcagttgtaagttagattttcattgctccttctaggatgaggtcagtcttaataccct 504

                                                                       
Query: 305 tccctcttgtcacatctaaaattacatcttacactagatttattagcaccctttctgttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccctcttgtcacatctaaaattacatcttacactagatttattagcaccctttctgttg 564

                                                                       
Query: 365 aaagagtcggtgatacaaaggatcaggaaaatttccagcttgccagaaatgggggtggng 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 aaagagtcggtgatacaaaggatcaggaaaatttccagcttgccagaaatgggggtgggg 624

                
Query: 425 tgggg 429
           |||||
Sbjct: 625 tgggg 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no447_f22.g1 MSMg01no447_f22.g1 CHROMAT_FILE:
MSMg01no447_f22.g1 PHD_FILE: MSMg01no447_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:15 2005
         (361 letters)



>mm_chr10_128730315_128731075
          Length = 761

 Score =  683 bits (353), Expect = 0.0
 Identities = 359/361 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtggtggctcttaacactttccaagcagtgaaacctatgccaaacaaattctttgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ctgtggtggctcttaacactttccaagcagtgaaacctatgccaaaccaattctttgctt 502

                                                                       
Query: 61  tatttggaagagctgagatagtcattcactatgtggcaggttgaatgtggtaggtgagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttggaagagctgagatagtcattcactatgtggcaggttgaatgtggtaggtgagtt 442

                                                                       
Query: 121 gagtggttttcagactaacagcaactcaggtggaatttcaggcacaatacaagcctgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtggttttcagactaacagcaactcaggtggaatttcaggcacaatacaagcctgatt 382

                                                                       
Query: 181 cctccttattacttatgcagaaatctttataatacccataagagttttaaatctgtataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctccttattacttatgcagaaatctttataatacccataagagttttaaatctgtataa 322

                                                                       
Query: 241 aaggtaatatccaacctgatatattttcttgaaagatgatctgattatatgttgcacctg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aaggtaatatccaacctgatatattttcttgaaagatgatctgattatatgttgtacctg 262

                                                                       
Query: 301 agttatttatttactctttgaatatttattgtgggttcactatgtgtgtgcaagaggacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttatttatttactctttgaatatttattgtgggttcactatgtgtgtgcaagaggacc 202

            
Query: 361 t 361
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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