BAC Information

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BAC

Clone NameMSMg01-447J24
Chromosome10 (Build37)
Map Location 35,741,667 - 35,741,866
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041585
Downstream geneLOC667860, Hs3st5, Hdac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447J24.T7 (MSMg01no447_j24.b1)MSMg01-447J24.TJ (MSMg01no447_j24.g1)
ACCAG536033AG536034
length826770
length of high quality
(start - end)
204 (52 - 255)426 (81 - 506)
definitionCHROMAT_FILE: MSMg01no447_j24.b1 PHD_FILE: MSMg01no447_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:35 2005CHROMAT_FILE: MSMg01no447_j24.g1 PHD_FILE: MSMg01no447_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAATATACTTCTATAACAACTTATACTGATGTATTAATT
ATTTTCATATTAACTTGTGGATATGTTTTCTTTCTAACCATATCAAAGTG
ACTACTGAACTTGACTAAGTCATTATAAAATCATAAATAAGTTTGTAAGT
AAATTTAGGAGAGAAATCTGTTATTAAAGTTACAATGACATGTAACTTAG
TGAAGAAAATAAGGGCTTATTTTTTTCATACTATCTCCAAGCCTACACAT
TCTTCCATGGTGCAGTATAAANNNNNNTGATACACATAAAAAAACATCAC
AACCTACTGAGGCCGTTACGTTGCTTAGATGCGACCGAACCNNNNNACGA
AAAAGGAAATTCCACAATTCTTAAGGGATGAAACGTAAAAATTTTGGATC
TTCCGGGACCTTCCCCGGGTTTTTTTACCAAAAAAGAAAGTGCCCCCCTT
TTTTTTCTCCTCTTTTTTTTTTTTAAAAGACGACAAATTCGTCTTTTTTC
TTTCTTCTTTAACANATTCCCTCCCACTTAAAGGGGGTCTTNNCCCCCTC
CCTTCTCTCCTCCACATTTATTTATTTTTTTTTATCCTTTTTCTTTACCC
CCCCCTCCTTTCATTTTTTCCCTACTTTCTTTTTTTCTATCACTTAATCT
TCTCTTTTTCCTTGTGTTTGTTTTTCTTTCCCACTTCTCCCCCTCCGGNN
NCCNGTNTTTATTGNATTGTCCCAATACACTTCTTTATGTTGTTTAGTCG
TTATTTTTCTCACAACTTCAATCAAN
AAACTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATCTTAAGACATACTGTG
TTTCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAGTGACCA
TTCTAACTGGTGTGAGGTTTCCACCTCAGGGTCATTTTGATTTGCATTTC
CCTGATGACTAAGGAGGTTGAACATTTTTTTTTAGGTTCTTCTCAGCCAT
TTGAATTTCTTCAGTTGAGAATTCTCTGTTTAGCTCTGTTTCCCAACTTT
TAATAGGGTTATTTGGTCCTCTGGAGTCTATCTTCTTGAGTCCTTTGTGT
ATAGTTGATATAAACACTCTATCAGATGGAGGATTGGTAAAGATCTTTTC
TCATTCTGTTGGTTGCCGCTTCGTCCTATTGACAGTGTCCTTTGCCTTAC
AGATGCTCTGCAATTTTATGAGGTTCCATTTGTTCCATTTGATTCTTGAT
CTTAGAGCATAAGCCAGGTGTTATGTTCATGAAAATTTTTTCTATGCCCA
TGTGCTTTTCCTCACTTCCTACTTTCTCTTCTACTATATTCAGCATTTTT
TTTTTTGTGGAGGGCCCTTGATCCCCTTGGAATTAAGCTTTATCCTGGGA
TTTTAAAATGGATCCACTGGAGCACTACCCCTCCTATTTAATAAAAAATG
AATTTCCTTGTAATTCTCAAGGCAAATGGGGGGGATTCTGAAAATATATA
CTCCTCCTCTTCCTAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_j24.b1 MSMg01no447_j24.b1 CHROMAT_FILE:
MSMg01no447_j24.b1 PHD_FILE: MSMg01no447_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:35 2005
         (204 letters)



>mm_chr10_35741463_35742066
          Length = 604

 Score =  371 bits (192), Expect = e-107
 Identities = 198/200 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaatatacttctataacaacttatactgatgtattaattattttcatattaact 64
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattcaaatgtactactataacaacttatactgatgtattaattattttcatattaact 345

                                                                       
Query: 65  tgtggatatgttttctttctaaccatatcaaagtgactactgaacttgactaagtcatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgtggatatgttttctttctaaccatatcaaagtgactactgaacttgactaagtcatta 285

                                                                       
Query: 125 taaaatcataaataagtttgtaagtaaatttaggagagaaatctgttattaaagttacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taaaatcataaataagtttgtaagtaaatttaggagagaaatctgttattaaagttacaa 225

                               
Query: 185 tgacatgtaacttagtgaag 204
           ||||||||||||||||||||
Sbjct: 224 tgacatgtaacttagtgaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)