BAC Information

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BAC

Clone NameMSMg01-447N17
Chromosome10 (Build37)
Map Location 9,859,552 - 9,860,038
singlet/doubletsinglet
Overlap geneLOC100039238
Upstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5
Downstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447N17.T7 (MSMg01no447_n17.b1)MSMg01-447N17.TJ (MSMg01no447_n17.g1)
ACCAG536210AG536211
length744743
length of high quality
(start - end)		487 (54 - 540)448 (84 - 531)
definitionCHROMAT_FILE: MSMg01no447_n17.b1 PHD_FILE: MSMg01no447_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:54 2005CHROMAT_FILE: MSMg01no447_n17.g1 PHD_FILE: MSMg01no447_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTTGTTCCAATAGTCACTGGGAAATTCAAAAAATGG
TGTTGGCTTCCATTGTACTTTACAATGTTCAAAGCTCCCTGTGCTCCCTT
TCTTGAGGATACTGTGCATCTTCCTAAGCCAGGCCAGCTCATTCAACCCA
CAGAGATCTGGGTACGCTACTGGAGAAGAGTATCTTTCCCATGGAGCCTA
TGAAGCTACTCTTCATATATAAATATATACTGGTCTGGCAAATAGATGTG
GCTTTCCAACTTTTTTTTTAAAGTAGACAAATATACAACATGGAAACTGC
ATAAAAGAGCACAGGGAGGTAGAATTTTTCTTGATAATATCTATCCCTTT
TTCATAGATAATGTCTATGCCACTTGAGTTATCTCTTTGACCCTCTATAA
TCTCAAAGTTGCCAATGGCAGGATTGGAAATTGCTATACAGACTTCCTTT
TTTTTATTGTTTGCCAAGTATTTCACTCCACAGTAGTCTGCTAGATGTCC
TGAGCATGCAATTAATTCATTAGCACTTTGGGCTTTTGTGTCTTCTGGAG
TCTTCCAGAAAATGCAGCATTCATGGAAAGAGAAATATTTTTTTTCCCAT
TTTTTATAAGGATTTAGCTCATTTACTTTTCCAATGGGATACCAAAAGGC
CCCCCTAAATAACCAACCCCTATTTCTTTTAAATCATCCATTCC

ATTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGGAATTAAGCTG
GTCTAGTAAAGTGGCATTTATAGGTTCACTTCTAAGAGCTGTGACCTCAC
TAGCCCTGGGTGGCTGGCTAGGTTTCTCCCCACTAGCCCTGGGTAGTTGA
CAAGGTTTCTCCACACTACCCCTAGGTACTCGGCTAGGTTTCTCTTCACT
AACCCTGGGTACTTGGCCAGGTTCTTCCCCACTAGCCCTGGGTAGTTGTC
TAGGTTTCAAGAGCCTGCATGATTTTCCAACGTGTTTTTACAATAACATT
GCTAGACAAAATAGGACTAGAAGCAACATAGTTCAATATAAAGGCTCTAT
ATCACAAACCCACAACCAACCTTATCCAAATGAAGAAAACCTCAAAACAC
TCCCATTAAAATCAGGAATGAAACAGCGATGGCCATTTTCTCTCCTCATT
TTTAATATAGTGCTGGCAGCACAGGCTGGAGTAATGAGACAAGATAGGGA
AAATAAAGATATACTAATAGGAAAAAAGAAGTGTAATATACCCTTTTTGC
AAAGGATATATCATGCATAAGAGATTACCAAACACGTCCCAAGAAAATGT
CCCGAAAAAAGATCAACCATTTTCCGCAAGGAGACCAGATACCAAAATCG
TTTTCGCATAACGCTGGATCCCTTTTCTGTACACCCCCCCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_n17.b1 MSMg01no447_n17.b1 CHROMAT_FILE:
MSMg01no447_n17.b1 PHD_FILE: MSMg01no447_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:54 2005
         (487 letters)



>mm_chr10_9859349_9860238
          Length = 890

 Score =  911 bits (471), Expect = 0.0
 Identities = 482/487 (98%), Gaps = 3/487 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacttgttccaatagtcactgggaaattcaaaaaatggtgttggcttccattgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggaattcacttgttccaatagtcactgggaaattcaaaaaatggtgttggcttccattgt 631

                                                                       
Query: 64  actttacaatgttcaaagctccctgtgctccctttcttgaggatactgtgcatcttccta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 actttacaatgttcaaagctccctgtgctccctttcttgaggatactgtgcatcttccta 571

                                                                       
Query: 124 agccaggccagctcattcaacccacagagatctgggtacgctactggagaagagtatctt 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agccaggccagctcattcatcccacagagatctgggtacgctactggagaagagtatctt 511

                                                                       
Query: 184 tcccatggagcctatgaagctactcttcatatataaatatatactggtctggcaaataga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcccatggagcctatgaagctactcttcatatataaatatatactggtctggcaaataga 451

                                                                       
Query: 244 tgtggctttccaactttttttttaaagtagacaaatatacaacatggaaactgcataaaa 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgtggctttccaacttttttttttaagtagacaaatatacaacatggaaactgcataaaa 391

                                                                       
Query: 304 gagcacagggaggtagaatttttcttgataatatctatccctttttcatagataatgtct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gagcacagggaggtagaatttttcttgataatatctatccctttttcatagataatgtct 331

                                                                       
Query: 364 atgccacttgagttatctctttgaccctctataatctcaaagttgccaatggcaggattg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atgccacttgagttatctctttgaccctctataatctcaaagttgccaatggcaggattg 271

                                                                       
Query: 424 gaaattgctatacagacttcctttttttt---attgtttgccaagtatttcactccacag 480
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 270 gaaattgctatacagacttcctttttttttttattgtttgccaagtatttcactccacag 211

                  
Query: 481 tagtctg 487
           |||||||
Sbjct: 210 tagtctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 890
Length adjustment: 10
Effective length of query: 477
Effective length of database: 880
Effective search space:   419760
Effective search space used:   419760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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