BAC Information

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BAC

Clone NameMSMg01-448M20
Chromosome10 (Build37)
Map Location 96,216,116 - 96,216,469
singlet/doubletsinglet
Overlap genenone
Upstream geneEea1, EG432491, LOC667380, Btg1
Downstream geneLOC628256, 4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448M20.T7 (MSMg01no448_m20.b1)MSMg01-448M20.TJ (MSMg01no448_m20.g1)
ACCAG536928AG536929
length764769
length of high quality
(start - end)
276 (48 - 323)354 (76 - 429)
definitionCHROMAT_FILE: MSMg01no448_m20.b1 PHD_FILE: MSMg01no448_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:12 2005CHROMAT_FILE: MSMg01no448_m20.g1 PHD_FILE: MSMg01no448_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAACCGC
GGAATTCTTGAGAGATTACAAAACAGTCTTTAAAAATTCTGGGGTCCTCT
TATATGAAGAATCAAAATTTAAATATACACACATGTACTGGCTGGTTTTG
TGTGTCAACTTAACATAGGCTGGAGTTATCACAGAGAAAGGAGCTTCAGT
TACGGAAATGCCTCCATGAGATCCAGCTATGGGGCATTTTCTCAATTAGT
GATCAAGGGGGGAGGACTCCTTGTGGGTGGTGTCATCCCTGGGCTGGTAG
TCTTGGGATTTATTAAAAAGCAAGCTTTGGGAAACAAGTCAGTAAGGAAC
ATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCCGCTTGAGTT
CCAGTCCTGACTTCCTTTGGTGATGAACAACAACATGGAAGTGTAAGCTG
AATAAACCCTTTCCTCCCCAACTTGCTTCTTGGCCATGATGTTTGTTGCA
TATACGACACCCCGACTCACATCACACATATACCCGTTTATCTTTACACC
ACTTATCCCTTCTCTTTCTCTATTCCCCTAACCCACAACCCCGTATTTTC
CGATCCGCCCCTTTTAACGTCTCTCTCTCTCTCTCGATTCTTATTACCAT
CGTCCCATATTTTTCCCTCGACACTTTCCATTTTCCCCTTTTTTTTCCCC
ACTTTTTATTTTCCCTTCACCCGCCTTGTTAACCATCCTTTTTTATTTTA
CTTTTACGCCCCCT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGAAATGTCTGGATTCCAACTTGG
TCTTTCTTTCCTAAGACACTCCAGGGGTTAATGTCTGGACAGTAATCAGA
GTCTGGCAGTGCCCACCCCACACATAATAGGCATTGTTGTGCTTTAGAGT
TTGTCTGTTTTCTCTGGCAGGCTTGACTCCTTGGAACAGATTCTAAAAGA
GGAAAGGAAAAAGTCTGTCTGCCTTTTTTTTTTCTTTCCTTTGTTTTTAA
TATGCACATTCAACAAAAGTATGAGGACCATCATAGAAATGTTATTTGCT
TGGATTTCCAGGAAAGTTGGGGAAGGTGATAACTTATCAGTTTAAAATAT
ATTTACCTCAAAGGGGAATGAGTATTCGTGTGTGTGTGTGTGTGTGTGTT
NNCTNTTCTCCCCTTCTTCTTTTTTTTATTTCCTGTTATTTTTCTACGCA
TTCCTCTCCCCTTTTTTTTTCCTTCTTTTTTTTATTTTCTCCTTCCCTTC
ACCCCCCCCCATTATTTTTTTTCTTTATTTCTTATTTTATTGAATCCCAC
CTTACCCCTTTCCTTTTTTTTCTTTTTCTTCCATTCTTTCTCTCTATTTA
TCTCCTTATGTTACTCTTGTTTCTTTTCCCCTTCTCTTTCCCTCGTTTTC
GTCTTTTCAATTTATGCTGCTCCTTCATTTATTACCTTCTGTTTATTCTT
CCTATTTTAATTCTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_m20.g1 MSMg01no448_m20.g1 CHROMAT_FILE:
MSMg01no448_m20.g1 PHD_FILE: MSMg01no448_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:12 2005
         (354 letters)



>mm_chr10_96215916_96216669
          Length = 754

 Score =  654 bits (338), Expect = 0.0
 Identities = 350/354 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaatgtctggattccaacttggtctttctttcctaagacactccaggggttaatgtc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tggaaatgtctggattccgacttggtctttctttcctaagacactccaggggttaatgtc 495

                                                                       
Query: 61  tggacagtaatcagagtctggcagtgcccaccccacacataataggcattgttgtgcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tggacagtaatcagagtctggcagtgcccaccccacacataataggcattgttgtgcttt 435

                                                                       
Query: 121 agagtttgtctgttttctctggcaggcttgactccttggaacagattctaaaagaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agagtttgtctgttttctctggcaggcttgactccttggaacagattctaaaagaggaaa 375

                                                                       
Query: 181 ggaaaaagtctgtctgccttttttttttctttcctttgtttttaatatgcacattcaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggaaaaagtctgtctgccttttttttttctttcctttgtttttaatatgcacattcaaca 315

                                                                       
Query: 241 aaagtatgaggaccatcatagaaatgttatttgcttggatttccaggaaagttggggaag 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaagcatgaggaccatcatagaaatgttatttgcttggatttccaggaaagttggggaag 255

                                                                 
Query: 301 gtgataacttatcagtttaaaatatatttacctcaaaggggaatgagtattcgt 354
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 254 gtgataacttatcagtttagaatacatttacctcaaaggggaatgagtattcgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)