BAC Information

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BAC

Clone NameMSMg01-449E13
Chromosome10 (Build37)
Map Location 64,588,912 - 64,589,187
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3
Downstream geneLOC665206, LOC216036, 1700023F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449E13.T7 (MSMg01no449_e13.b1)MSMg01-449E13.TJ (MSMg01no449_e13.g1)
ACCAG537294AG537295
length732728
length of high quality
(start - end)
583 (79 - 661)272 (322 - 593)
definitionCHROMAT_FILE: MSMg01no449_e13.b1 PHD_FILE: MSMg01no449_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:52 2005CHROMAT_FILE: MSMg01no449_e13.g1 PHD_FILE: MSMg01no449_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCTGTCATGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATTTGTTGGT
GGCCTTTTTGTCTTATTGATAGTGTCTTTTGCCTTACAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTGTTGATTCTAGATCTTAGAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTTTCCCATGTGTTCATATCTTCGAGGCTTTTT
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTC
CTTGATCGACTTAGATTTGACTTTAGTACAAGGAGATAGGAATGGATCAA
TCCACATTCTTCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTG
AAAATACTGTCTTTTTTCCACTAGATGGTTTTAGCTGCCTTGTCAAAGAT
CAAGTGACCATAGGTGTGTGGGATCATTTCTGGGTCTTCAATTCTATTCC
ATTGGTATACTTGTCTGTGCTGTACCAGTACCATGCAGTTTTTATTACAA
TTGCTCTGTAGTACAGCTTTAGGGCAGGCATGGTGATTCCACCTGCAGTC
CTTTACTTGCATGGNTTTCTCTCCCCTCACTC
NNNNCCGATGATGTGGGAGGCCTGGGGGCGCCTGTTCACAACATGAGGTG
AACTATAGAATATCAGCGCAATTCTTTTGATCAATATGCATTGTCCATGA
TCACAGGGCAAATCTATCAGCTTTAAGAATGTATTATGCTTGAAATCATT
GATCTTCATTGATATTTTTATTTATGACAGGAAGAAAGGAATATGGTAGG
GATTGCTATTTTAACAGGGGAATAAACCTTTATAGAGGGGAAGTGGTCCC
ACTCATATAGTTTCAGTGGCTAGATCTCAAAAGCAGAGATAAGATGACAC
AATTGATCTTCCATAAGTATTGTAGGTCACAGCTGAAAATAAGCTAACAA
AGGGAAAAGTAAGATGATCAACTCTGTAGGAACATAAGAAGATTGAGGAA
GCTAGACACATAAAGATAAGAGATCTGGTTTCAACTTTCTGTTTTCCTAG
TTTTGGACAAATCTTCTAAGAGTTATCTTACAATAAGACACTGGTGGACA
TTGGACTCCCCCTCTGAGCTTCTGGAGCTTGGTTGGAACTTGTGAAGGAA
CTTTGCAAGGGATGTGCCAAAGGGTAATAATGAGAGCTGGCAGACTAAGA
CTCATAGTCATGGCTTGATGATTTTGTCTTAAGTTCAAAAAAAAAAAAAT
ACTGTCCCTTGGGTGTTTTTCATTACACAGGTTGCCGTTTCCGGCTTGAG
GCAGAGTTCTGCTGCTGTGATACCAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_e13.g1 MSMg01no449_e13.g1 CHROMAT_FILE:
MSMg01no449_e13.g1 PHD_FILE: MSMg01no449_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:52 2005
         (272 letters)



>mm_chr10_64588712_64589387
          Length = 676

 Score =  443 bits (229), Expect = e-129
 Identities = 265/279 (94%), Gaps = 10/279 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaggtcacagctgaaaataagctaacaa----agggaaaagtaagatgatcaactctgt 56
           |||||||| ||||||||||||||||||||    |||||||||||||||| ||||||||||
Sbjct: 201 gtaggtcatagctgaaaataagctaacaaatgcagggaaaagtaagatgctcaactctgt 260

                                                                       
Query: 57  aggaacataagaagattgaggaagctagacacataaagataagagatctggtttcaactt 116
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaacataaaaagattgaggaagctagacacataaagataagagatctggtttcaactt 320

                                                                       
Query: 117 tctgt-tttcctagttttggacaaatcttctaagagttatcttacaataagacactggtg 175
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtctttc-tagttttggacaaatcttctaagagttatcttacaataagacactggtg 379

                                                                       
Query: 176 gac-attggactccccctctgagcttctggagctt-ggttggaacttgtgaaggaacttt 233
            || |||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 380 -accattggactccccctctgagcttctggag-ttcggttggaacttgtgaaggaacttt 437

                                                  
Query: 234 gcaagggatgtgccaaagggtaataatgagagctggcag 272
           ||||||||||||||||||||||| |||||||||||||||
Sbjct: 438 gcaagggatgtgccaaagggtaagaatgagagctggcag 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 676
Length adjustment: 9
Effective length of query: 263
Effective length of database: 667
Effective search space:   175421
Effective search space used:   175421
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)