BAC Information

Click to search

BAC

Clone NameMSMg01-449E16
Chromosome10 (Build37)
Map Location 128,759,833 - 128,760,078
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780
Downstream geneOlfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449E16.T7 (MSMg01no449_e16.b1)MSMg01-449E16.TJ (MSMg01no449_e16.g1)
ACCAG537300AG537301
length658742
length of high quality
(start - end)		48 (97 - 144)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no449_e16.b1 PHD_FILE: MSMg01no449_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:52 2005CHROMAT_FILE: MSMg01no449_e16.g1 PHD_FILE: MSMg01no449_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCCACCTTCCCGTGGTGGGGNCNNTTCTATAATTGCGGCCGCTAAA
CGACTCCTATTTCCAGAGGACCGCGGAATTCTACTCTTTTCAGGACAAGA
GAAGGCTATCCTCTCTTTCTCTATCTATTCAATGGTAGTTCTTGGAAGTT
TTTCACTACAACCCGAAAAGAACAACCTAAAGAGTTCAAGTGGTCCAAAT
TTGGGAAAGGAAAGACCCAAGTATGCTTATTGGCAAGAATTGAAAAGTAT
CCTTTTTACCCCCCAAATTCCCCAAAAAAACCCCCAGGGGAAAAAACCCC
CCCGGAAAGGGACGGGGAACCCAATTTTCTAAAACCCCCCCCCCCTTTTT
TTTTTAACCCCCCCGAACCTTTCTTTTTTTTAAAAAAAAAAAAAAGGGGG
CGGACCACAAAAATTTTTTTGGAAAAAAAAAACCCTCTCCCTTCCAAAAA
AACACCCCACACAAAAAAAAAAAGAAAAAAAATTTTTTTGGGGGGGGGGC
CCCCCCCTCCCCTCTCCCCCGGGGGAAAAAAAAACCCCCTTTTTTTTTAT
AAAAAAAAAATTTCTTTATCTTTTCTGTTCTCTCTCCCAAATAAAAAAAC
AACATTATATTTCTTTCTTTTAAAAATAAAAAAATATCTCTCTTAAACGA
GAGGGGGG

NTTAACGGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAATCCTCATCACAGAGG
GGAAGGAAAACCATCTGGAAACTAAGAACATGTGATTTTATTATGACAGT
TTCTGGTTAAGAATTGAAAGGGACACATATTTATATATCACAGTTTTTCA
ATATTTAGTTTCTTAGTAATTGAATTATTGGAAAAGGGTACAGCGCTATA
TGTCTTTATTCCCACCATTCTGGAGGCAGAGGCAGGCAGATCTCTGTGAG
TTCTAAGCCAACCAGGACTACATATCGTGATCCTGATTCAAAAACAATTA
GACAAACAAACAATCTAATACAAATAGCAGTAGTAGCAGCAGCAGCAACA
ACAACAAGAACAACATAACCAACGAATACCATAAGAGATCATCATGATGA
CCTGTAGCATAAGACAGTAAAACACTTTACTATTTGTAATGAAAAATTAG
GAGAGATGGTGCTTTGATTGTTCAGCGTACGCACGCTTCACTTCTTTAAG
AGAAATGCAATTTTTCTTAATTAACTCCTGATAAGTTTGCTTAACTTGTT
TGGTCCTTCACATTATTTATGAAAGGTATTCTGTATGTGTGTATTTGGGA
AATATTAACCCCTAACCCCTTTTTTATTAAGGGTCATCTGCTTCCTTTTT
TCAGAAACGGTTTGACCTTAAATCGAAATATTCTCCCCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_e16.g1 MSMg01no449_e16.g1 CHROMAT_FILE:
MSMg01no449_e16.g1 PHD_FILE: MSMg01no449_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:52 2005
         (245 letters)



>mm_chr10_128759722_128760367
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttaatcctcatcacagagggg-aaggaaaaccatctggaaactaagaacatgtgattt 59
           ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 357 ctttaatcctcatcacagaggggaaaggaaaaccatctggaaacaaagaaaatgtgattt 298

                                                                       
Query: 60  tattatgacagtttctggttaagaattgaaagggacacatatttatatatcacagttttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tattatgacagtttctggttaagaattgaaagggacacatatttatatatcacagttttt 238

                                                                       
Query: 120 caatatttagtttcttagtaattgaattattggaaaagggtacagcgctatatgtcttta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 caatatttagtttcttagtaattgaattattggaaaagggtacagcgctatatgtcttta 178

                                                                       
Query: 180 ttcccaccattctggaggcagaggcaggcagatctctgtgagttctaagccaaccaggac 239
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 atcccaccattctggaggcagaggcaggcagatctctgtgagttctaagccaaccaggac 118

                 
Query: 240 tacata 245
           ||||||
Sbjct: 117 tacata 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |