BAC Information

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BAC

Clone NameMSMg01-449G21
Chromosome10 (Build37)
Map Location 83,586,998 - 83,587,452
singlet/doubletsinglet
Overlap genenone
Upstream geneChst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
Downstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449G21.T7 (MSMg01no449_g21.b1)MSMg01-449G21.TJ (MSMg01no449_g21.g1)
ACCAG537404AG537405
length755763
length of high quality
(start - end)		459 (54 - 512)407 (85 - 491)
definitionCHROMAT_FILE: MSMg01no449_g21.b1 PHD_FILE: MSMg01no449_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:03 2005CHROMAT_FILE: MSMg01no449_g21.g1 PHD_FILE: MSMg01no449_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAA
TCCGCGGAATTCTGGAATGGTTTTCTGATGGACAGTTAGGTCTGGGATGT
AGAATTAAATTCCATGGTCTGGTCAGCCTGAGTCTCTGAAGTTGGAATCA
CCTGGGCTCCACATCTCATCCTCCAACAGAGGGCCTAGGCTCCTACTAAA
GCTCGAAGCCAATGGTGGTCCTAACAGCGGGAGTGGACGTGGGCAGAGGC
TCTTGAGAACTGGTTCAGCGCATCTGCCTCATTCTGTGGCTCAGTGCAGA
TCCCACAGAGGCAGGCTAGACTAAGGGGTGGTGGGGAAACCGTTTCCCCC
TTCCAAGGGGTAGAGCTAAGAAGCTGATTGCTTTGGCATGCTCCCCCACC
GAGTCATGTATTATGGTATTTCTTTCATGCTTTTTTTTCTTCTTTTCATT
TTTTGCTGTCTCATCTCTGCTGTTTATTTCTTAATCTTCATCCAAACCAT
CATACCTCTTGTCCTTATATCTTCCTCCTTTTTTCTATCTTTTTCCTTTT
AGATGAATAGCGAGGATCTTGCCTGTACTTTGGAAAGGTATCCTAAACTT
TCACCTCCAGCCATTCCAACCAATTTATTTTTCCTCCCAGCCTCCTGATT
TCTGAGAACTTTTTCCCGGGGTCCGAAGGGACTTTCCCGGACAACGGCTT
TTGGAAAAAAGGGGACCCCCCTCCCGGGGGGGGGGTTCCAAATTCTTTCG
TCCCG

NAAATTTTTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCTAAAAGCTGAA
CAGGAAGGTCTCAGAAATACTCAGACTGGGAGTCCCAGTGAATTCAAACC
TGTGCCCAAAGCAAGTGCAGACAAAAGTAGCCTCAGCTGCTCAAGAGATG
AATGGTGTTAAAAGGAATCAAAACATTTTACACTGGGACAATAGGAGTGG
TACCCCAGGGGGGGAGGGGGTCAAGGCTACAGGGTGTGAAAATGCACTCT
TATTGGAAAGACTTTCCTACATGCAGGGATGCTCTGATTGACTAAGGATG
CTTGGGGAACTGCTTTCCAGGTTCAGTCACACAGCCATTCAGAGGCGGCC
ACAGCCCAAGGCGGGGGCGTGGCTACTTTCAAACTGGCAGCAAAACTATG
CTATCCATGTGGCCCTGGTCTTTCAGGCATGCAGTCATGGAAGTCACCAT
CAAGAGTTTGGGGGAAAAAAGTACGAGGCCAGGCAGTGGGAGCAGGATTG
GAAATTGTGAGAAAATGAAAGGTGGAAAGAAGCTCTGTAAAATTGAAAGG
GAAAACTGCTTGGTGGGGAAAACCCCACCGTTTATAATACCGGCCATATG
CGAATCCTCTCCAAAAAAAATTTCCTTCCCAAAAAAAACCCCTTCACAAA
AAAACCACTGTTTCATCCTCTGGCCCTCCCCTCAATCTGCCTTCCTGCTA
CCCTTCTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_g21.b1 MSMg01no449_g21.b1 CHROMAT_FILE:
MSMg01no449_g21.b1 PHD_FILE: MSMg01no449_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:03 2005
         (459 letters)



>mm_chr10_83586794_83587652
          Length = 859

 Score =  832 bits (430), Expect = 0.0
 Identities = 450/458 (98%), Gaps = 5/458 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctggaatgg--ttttctgatggacagttaggtctgggatgtagaattaaattcca 61
           ||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggaatggagtttt--gatggacagttaggtctgggatgtagaattaaattcca 262

                                                                       
Query: 62  tggtctggtcagcctgagtctctgaagttggaatcacctgggctccacatctcatcctcc 121
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 tggtctggtcagcctgagtctctgaagttggaatcacctgggctctacatctcatcctcc 322

                                                                       
Query: 122 aacagagggcctaggctcctactaaagctcgaagccaatggtggtcctaacagcgggagt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacagagggcctaggctcctactaaagctcgaagccaatggtggtcctaacagcgggagt 382

                                                                       
Query: 182 ggacgtgggcagaggctcttgagaactggttcagcgcatctgcctcattctgtggctcag 241
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ggacgtgggcagaggctcttgagaactggttcagcgcacctgcctcattctgtggctcag 442

                                                                       
Query: 242 tgcagatcccacagaggcaggctagactaaggggtggtggggaaaccgtttcccccttcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgcagatcccacagaggcaggctagactaaggggtggtggggaaaccgtttcccccttcc 502

                                                                       
Query: 302 aaggggtagagctaagaagctgattgctttggcatgctcccccaccgagtcatgtattat 361
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 503 aaggggtagagctaagaagc-gattgctttggcaggctcccccaccgagtcatgtattat 561

                                                                       
Query: 362 ggtatttctttcatgcttttttttcttcttttcattttttgctgtctcatctctgctgtt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggtatttctttcatgcttttttttcttcttttcattttttgctgtctcatctctgctgtt 621

                                                 
Query: 422 tatttcttaatcttcatccaaaccatcatacctcttgt 459
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tatttcttaatcttcatccaaaccatcatacctcttgt 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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