BAC Information

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BAC

Clone NameMSMg01-449M14
Chromosome10 (Build37)
Map Location 76,105,765 - 76,105,976
singlet/doubletsinglet
Overlap genenone
Upstream geneSusd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2
Downstream geneCol6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449M14.T7 (MSMg01no449_m14.b1)MSMg01-449M14.TJ (MSMg01no449_m14.g1)
ACCAG537673AG537674
length735755
length of high quality
(start - end)
559 (53 - 611)212 (337 - 548)
definitionCHROMAT_FILE: MSMg01no449_m14.b1 PHD_FILE: MSMg01no449_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:30 2005CHROMAT_FILE: MSMg01no449_m14.g1 PHD_FILE: MSMg01no449_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCTTTTTTTTTTCCTTCCGAGACAGGGTTTCTCTGTATAGCCC
CGGCTGTCCTGGTACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA
ATTCTCCTGCCTCTGCCTCCCAAGTCCTGGGATTAAGGGTGTGTGCCACC
ACTCCCGGCCAATTTTAGGCATTCTTATAAGATCATCATTAGGACTTAAG
TCATCTATTTGTTTATATAGCATCACTACAAGACAGTGGGGTCTGCAGAG
ATCTGCTCCAAAGGGGTGTGCTACTATTTATTGATTGTTATATATGTTTA
ATAATAACAGGAAAAGCATATTAATAGCAGGAATCTTTCCTAAAATGAAT
CCCTTATAGCCTTGTTTAATAAGGGTGTACCTGTCACAGATTATATAATA
ATCCGAAGCAGGCCATTTCAGGATGATCACCTGCTAGTTATTAGCTTGTC
CCATTATGGCTCCTAACATTTTCCTACAATAAAAGTACTATCTGCCCTAC
AATGTATATCACACATACATATATGCCTATATTTTCTCTACTACATGTCT
TTTTCATCAGTTCAATGTTGGCTGAATTCGAAGTTCAGGCTGACTTTGTT
TCCTCATAGCAGCTGATTCTGTTACTGAGTCATGACTTTATTTCACTCTG
GTGCAATTTTGGCTCTCCCTGCCCTGTTTTATTCN
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATAAAAAAAGA
AAAAAGATAGAACAAGTCAGCAGAAGAAAAAAAAAGATTGAAGCTGCCAG
ATCCCAAGGCCTGCAGAACAGCCAGACAACACATGCAGCTGCCTCCCCCA
GAACCTCCCCGCCCCCACGGGGCCACATAAGGGGGGGAAGGCTGGGTGGA
GGTTCCCGTTCCTCTAATGCATTGTGTGGTCTGTCTTGGCTTCTAGGGTT
TTCTAATTTTACAGCAAGAAGGCGCCTCNTTTGCTTGGTGGGAAAGCAGC
CCTGGCCGAGCCTGGGTTTGCGGGAGACCTTCCCAGGAGGGACCTGAGAC
CAGAGCTCAGAGACCCATCCTGAAGGAGTTAAGGGATAAGGCAGTACTCG
CTCTGGTTGCTGGCGCCCACAGCCTGCTGAGTTTTCCAGCCTTAGGTGTC
TGCTGGGAAATGCAGCTGGGAGCCAGGTGACATGGCTGTGTGGGTTTGTT
TGGGAGTTACCAGAGAAACGGGAGGGAAAAAATAAGAAAAGAAGTTTCCA
CCAGAATCCCAATTGACTTCCAAAGTGTCCGTGCCGGCAGATTGAAGATA
TCCCTGCGCCCTGTTTCTGTTTTTTTTATGCCACCCACCTGAAAAACCCA
CTTCCATTCCCCACCCACCTCACCCCCTCTTAGCCTGCTCCCTTCCCCCA
CATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_m14.g1 MSMg01no449_m14.g1 CHROMAT_FILE:
MSMg01no449_m14.g1 PHD_FILE: MSMg01no449_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:30 2005
         (212 letters)



>mm_chr10_76105565_76106176
          Length = 612

 Score =  395 bits (204), Expect = e-114
 Identities = 210/212 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgggaaagcagccctggccgagcctgggtttgcgggagaccttcccaggagggacctg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggtgggaaagcagccctggcctagcctgggtttgcgggagaccttcccaggagggacctg 353

                                                                       
Query: 61  agaccagagctcagagacccatcctgaaggagttaagggataaggcagtactcgctctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 352 agaccagagctcagagacccatcctgaaggagttaagggataaggcagtactcactctgg 293

                                                                       
Query: 121 ttgctggcgcccacagcctgctgagttttccagccttaggtgtctgctgggaaatgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttgctggcgcccacagcctgctgagttttccagccttaggtgtctgctgggaaatgcagc 233

                                           
Query: 181 tgggagccaggtgacatggctgtgtgggtttg 212
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tgggagccaggtgacatggctgtgtgggtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)