BAC Information

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BAC

Clone NameMSMg01-449N04
Chromosome10 (Build37)
Map Location 79,152,731 - 79,153,236
singlet/doubletsinglet
Overlap geneGzmm
Upstream geneCasp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34
Downstream geneBsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449N04.T7 (MSMg01no449_n04.b1)MSMg01-449N04.TJ (MSMg01no449_n04.g1)
ACCAG537701AG537702
length748756
length of high quality
(start - end)		606 (52 - 657)507 (77 - 583)
definitionCHROMAT_FILE: MSMg01no449_n04.b1 PHD_FILE: MSMg01no449_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:33 2005CHROMAT_FILE: MSMg01no449_n04.g1 PHD_FILE: MSMg01no449_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCAAAACCTAACATGGAGGCTCCGGTATGATCCCGAGAA
ACCACTTCTTGGCATGTGTCCAAAGGCCGCAGTATCCAGCTGCACAGGGA
CCTGCTCAGCCCTGTCTGTCTTTACTGCTCCATGCATAAGGGCTAAGAAA
TGGAAACTGATTTCAGACCCCTGGACAGGGGGCTGAGATGCCCATTTTAC
ACACCAAAGCAGACCTGCCCTCCAGGTTCTCCCAACATCCCTCAGTGCCT
GCCTGGCATGCCCTGCCCCAACCCCGGGGCTGCCCTTACCCCAGAGGCTC
CTCTCTACAGAATCCAGACATCTTGGTCTCTTGCTCTCTTCTTTTTCTTC
TTTTTCTCTCCCTCCCCCTTTCCCCATGGCAACTGCACTGACCTCAGTGA
GGCCAGGGAACTCACCTGGGGACAGCTCCAATAAGCCTGCCTTTAATATA
ATCTAATCTGGTGTAAATTGGCTCACTTCACTGGCAGTGGAAAAAGAACC
CATCAGAAACAACCCAAATGCTCTTCAACCAATAAATAGATACTGAAAAA
TGTTGTCTATATATACTGTGGGATATTATTCATCTGTCGGGAAAAACAAT
CATGACACTTGTAGGTTCAGTGACTAGAACTCCAAAAGATGGCATTGAGC
ACGGGAGCGCAGACCCAGAAAGACAACCTCCAATGTACTCTCTTACTG

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACCCTTGCTCTCCAGTGAGTTT
GAGGCCATCTGTGCTACAGAGCCTCCTGAGCACTGACATTAGAGGTGTGT
GGCTACCACACATGACTTTCTTTTTGTAAAGGTATTGCCATGTAGCCCTG
GCTGGCCTGGAATTTATAAGTAAATACCCGCTTCTTGAGTTTGGTCAATG
AGAGGCTGTGCTACCATCCTGAGGTACAGATGGCCTACAACTCACTGTAG
AGCTGTGTCTCATGCCTGTAACCCTATTCTCTAGGGGACGAGCCAAGCCA
CAGGGTCCCTGAGGCTCTGGGAATGTGTTGAATCAGTGAAGCCTCAATTA
AGGTATAGGGCAATGCAGAAAACACCAGACTTGGTCTCTGACCTCCATAT
ATATACATCTATCTGTATGCATAGATGCATTTGTCTATTTGAGACAAGAT
CTCACTATTGTAGTCCTGGCTGACTGGAACTCACGGAATCTGCAGCCCTC
TACCTCGTAAGCACTGGGATTGGAGTTATGTGCCACCTCCCAAGTTTTGA
TGCTTATATTAGNTTGGAAACTTTTAGAAACTCTCCCAAAAATAAGGAGG
GAGAGAGGAGGTTGGCTTTTTCAAGTATAAAACTTATGGGCTAACCCCTG
GTCCCTCACACCACCAAGTAACTTTTTGTCTTGAGAGACCCTATAAAACT
TAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_n04.g1 MSMg01no449_n04.g1 CHROMAT_FILE:
MSMg01no449_n04.g1 PHD_FILE: MSMg01no449_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:33 2005
         (507 letters)



>mm_chr10_79152531_79153436
          Length = 906

 Score =  949 bits (491), Expect = 0.0
 Identities = 503/507 (99%), Gaps = 1/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacccttgctctccagtgagtttgaggccatctgtgctacagagcctcctgagcactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacccttgctctccagtgagtttgaggccatctgtgctacagagcctcctgagcactga 260

                                                                       
Query: 61  cattagaggtgtgtggctaccacacatgactttctttttgtaaaggtattgccatgtagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattagaggtgtgtggctaccacacatgactttctttttgtaaaggtattgccatgtagc 320

                                                                       
Query: 121 cctggctggcctggaatttataagtaaatacccgcttcttgagtttggtcaatgagaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggctggcctggaatttataagtaaatacccgcttcttgagtttggtcaatgagaggc 380

                                                                       
Query: 181 tgtgctaccatcctgaggtacagatggcctacaactcactgtagagctgtgtctcatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgctaccatcctgaggtacagatggcctacaactcactgtagagctgtgtctcatgcc 440

                                                                       
Query: 241 tgtaaccctattctctaggggacgagccaagccacagggtccctgaggctctgggaatgt 300
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaccccag-ctctaggggacgagccaagccacagggtccctgaggctctgggaatgt 499

                                                                       
Query: 301 gttgaatcagtgaagcctcaattaaggtatagggcaatgcagaaaacaccagacttggtc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctgaatcagtgaagcctcaattaaggtatagggcaatgcagaaaacaccagacttggtc 559

                                                                       
Query: 361 tctgacctccatatatatacatctatctgtatgcatagatgcatttgtctatttgagaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctgacctccatatatatacatctatctgtatgcatagatgcatttgtctatttgagaca 619

                                                                       
Query: 421 agatctcactattgtagtcctggctgactggaactcacggaatctgcagccctctacctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agatctcactattgtagtcctggctgactggaactcacggaatctgcagccctctacctc 679

                                      
Query: 481 gtaagcactgggattggagttatgtgc 507
           |||||||||||||||||||||||||||
Sbjct: 680 gtaagcactgggattggagttatgtgc 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space:   445312
Effective search space used:   445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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