BAC Information

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BAC

Clone NameMSMg01-449O11
Chromosome10 (Build37)
Map Location 94,279,553 - 94,279,797
singlet/doubletsinglet
Overlap genePlxnc1
Upstream geneUsp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik
Downstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449O11.T7 (MSMg01no449_o11.b1)MSMg01-449O11.TJ (MSMg01no449_o11.g1)
ACCAG537762AG537763
length767759
length of high quality
(start - end)
244 (80 - 323)246 (80 - 325)
definitionCHROMAT_FILE: MSMg01no449_o11.b1 PHD_FILE: MSMg01no449_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:39 2005CHROMAT_FILE: MSMg01no449_o11.g1 PHD_FILE: MSMg01no449_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTATCTATATTTGCGGGCGCTAAACGAATCACTATTTCTAAGAAGC
CGCGGAATTCTCCTTCTCCCCAAGACATGGCGGGAACCCTCCTGGTCCCT
TCATATAGTCTCTCCATCTCCTCCTTCTCTCTACTCTTTCTTCCTTGGAC
CTCCTGACTGGGATCTGAAGTCCTGCCCTATTCTCTTCTGCCCAGCTAAT
TGGCCAATCAGCTTTTTAGTAACCCCCGATCAGAGGTGAAGAAAAACAAT
TTTTATATAACATTGAAATCAGAGAGCCTTAACCATGCCATTGTCTGGCT
TGCAACCAGACATCTAAGCATCTTTTTTCTCAGTGCACAACACCATTCCC
CAGCAGATCATTTGCTCTCTTAACACTAAAGCTCTCATCCTGAGTTGGAT
GTCACCAGATCTCTTTATTTGTTCCTCTTCCCAGTGGTGCCATTGATTAC
AAGTCACTCTCTGTATGCCACTGCCCCCTTGAGGGTGGGTACCTTTCTCC
TCTCTGGTTGCAGCAGCCCTGGCCCCATTTCTTACTAATCACTCTGCTTA
AACACCCTTCCAGTTTTTAACGTTGTATCGCTGTTTTCTCCTTCTTCCTT
CTAACCTCTTTTGTCTTTACTCGCCCTGTAGCCTTCTCTTTTGAGCCATC
TCGTTTTACAATATCTTCTTAATTTTTGTTATTTTATTTCTATCTATCCG
ATTCTCTGGACCCTGTATATTTATTTTTATTTCTCTTATTCTATCTTATA
ATTGTGTTCTATTTTCT
NAAAAAACGAATGCTGTGGGTAGCCTGGNGGNCGCCTGGTACAAACATGG
AGGTGAACTATAGAAGTTCCGAAAACATCTGAGAGTAAATCCAGACGCAA
ATTGATTTGTGTTCATTTTTCTCGGCGCGCAGTGCTTATTGCTCTGACAG
CAGTTTCCTAGAGTGTGAGTGGAGGGCCCCCTCAGGACTGGCCCAAGTCT
TAATACTCCCCATCCAGAGCAGAGACACCCACCTGAGCCTCTCTTCTATG
CTAGGGATTTTTCAGTGTCCTCTTTGCCTCAGAGTGTGGGCATGACAGGG
TCGATCTTTGGCCAATGTCCCATGGCTTCTTTAGTGGATGTATCACCTGT
GCATCCCCTCCCCTGCCAAGGCCCACAGAGCCAAGCTCTTCTAGGTGCTC
AGTAGTGTTGGGGATTGTTTAAAACATGTTCTCAGGCTACCCACAACAGG
TATGGGAGACACATCTATCAGCTCGGAACACACACACTCAGAGAATCCCT
TGCAGGCATGCCAGCAGAATGGAAGGCTAACTGGACCATTCAGTCTGGGC
CAATGCTCTAGGATCTATAGCTCCTTTTCTGACCACCACAAAAGGTTGGG
TTTTTGAAGCACATTCTTTTTCCTCTATTGGACTCTGTAACCCCCTTACT
TCCTTTGCAAATACCTTTTTTATTTTTATGGAAGCATTTGGCGGTTGGTG
GCCTTCCCTAATCCAACAGGCCATGGCATTCTCCTTTTTTGTCTTGATTC
CCACAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_o11.g1 MSMg01no449_o11.g1 CHROMAT_FILE:
MSMg01no449_o11.g1 PHD_FILE: MSMg01no449_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:39 2005
         (246 letters)



>mm_chr10_94279353_94279997
          Length = 645

 Score =  429 bits (222), Expect = e-125
 Identities = 240/250 (96%), Gaps = 9/250 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagagtaaatccagacgcaaattgatttgtgttcatttttctcggcgcgcagtgcttat 60
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 201 tgagagtaaatccagacgcaaattgatttgtgttcatttttcacggcg-gcagtgcttat 259

                                                                       
Query: 61  tgctctgacagcagtttcctagagtgtgagtggagggccccctcaggactggcccaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgctctgacagcagtttcctagagtgtgagtggagggccccctcaggactggcccaagtc 319

                                                                       
Query: 121 ttaatactccccatccagagcagagacacccacctgagcctctcttctatgctaggga-- 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 320 ttaatactccccatccagagcagagacacccacctgagcctctcttctatgctagggagc 379

                                                                       
Query: 179 --tttttcagtgtcctctttgcctcagagtgtgggcatgacagggtcgatctttggccaa 236
             |    |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agt----cagtgtcctctttgcctcagagtgtgggcatgacagggtcgatctttggccaa 435

                     
Query: 237 tgtcccatgg 246
           ||||||||||
Sbjct: 436 tgtcccatgg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space:   150732
Effective search space used:   150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)