BAC Information

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BAC

Clone NameMSMg01-450M09
Chromosome10 (Build37)
Map Location 50,895,550 - 50,895,789
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1
Downstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450M09.T7 (MSMg01no450_m09.b1)MSMg01-450M09.TJ (MSMg01no450_m09.g1)
ACCAG538421AG538422
length783797
length of high quality
(start - end)
153 (128 - 280)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no450_m09.b1 PHD_FILE: MSMg01no450_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:49 2005CHROMAT_FILE: MSMg01no450_m09.g1 PHD_FILE: MSMg01no450_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTCTATAATTGCGGNCGGAAAAAGAATCACTTTTCAAAAATATCCGN
GGAATTCTCATCTTCCGAATCTTGAATGGCTGAGAAGCACCTAAAGAAAT
GTTCCGAGTCCTTAGTCATCACCTAAATGCAAATCAAAATGACCCTGCTA
TTCTACCTTACACCAATTAGAATCGGCTAAGATCAAAAAATAAGTGGCAG
CAGATGTTGGTGAGAATGTGGATAAAGAGGAACACTGGCGACATCGTGGA
TTGTAAACTGGTACAATCACTCTGGAAATCAATATGCAGGTTCCTTATAC
CATTGCAAATAGATCTACTTGATTATCCAGGTTCTTGGGCATACCTCTCT
TGCATATATACTCAAAAGATGCTCCACCATGCCACAGGGGCAGGGGCTCT
ACTATGTTTATAGCGCCATTATTTGTGATATCCAGAAGCTGTAACCTACC
TACACTCCCTCACAATATCTATATTGTATATTTAACATGTGGCCCGTTTA
CTCTACGCAATCCCACTCTCTTATCAATAACGATCGACACCATTTGTTGT
TCTTTCTTTCTTTTTCTCCATAAAATTTCCTTCTGCTTTCATCCCCCATT
TCCTCTTATACTCCCTGTCCCCCTTCGTCATTTTTCCCCCCTTCACCCTT
ACTCCCTTTTTCTTTTTTTCCCTTTACCCGCTCCTTTTTCCCTTCTCCCT
CTTTTACCTTTCCTTTCTTCCCTTCTATCCTCACCTACACAATATCCTTT
TTATCTCTATCCCCTTCGCTCTCCTTTTTCCCC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTATTTGGGCTTTTGAGGGGGAACAG
TGAGCAGCTTTGCTGTTTTTGCTCGCAATGAGAAAGGCATGCGTACATGA
GAATGCTGCTAATTTTAATGGCCATTCAGAAAGATGGATTAAACTGGGTA
GCAAAATAAATTTCAAGAGTGCTTTTAATGGTGAAACAGTCACTAACTGA
TAAAAAGATGAAAGAAAAAAGGAAGCAAAACTACTCCATCTCAAAACTGT
TTTAGGGCCAAGGGTAAATTTTCTTGGTGTGAAGCTGTGGTTCTTTTGAT
TTCCTGGCACAAGATGGATTTAGGCCTGATATCCTGGGCCTTTACTCCTC
CTGGAGCCTGCCTGCTCATATTAAAGCTGATCTTTTGCTGTCCTGTAAAC
TGCTTGTCCATTGTCCATTTAACTTGCCAGTATTCTGCTCTCCTGCGTGG
AAAATGCTGATCCTCCTCCATCTCCTGTCCTCTCTCTTACCGATTTCGCT
TCTTCCTTTTTTACTCTTGCTCTTTTACTATCCCTTCGTTTTTCGCCTTT
CCTCCAATCCTTTGTTCCCTCTTCCTCCTACTCCTCCTTCTTCTTCTCCC
ATCCCGTCTCCTTCCTCTTTTCTTTTTCTTCATTCCTTTTCTTTCTTTCC
TTCTTTCTTTTTTTCTCCTCTTCACTCTTCTTTCCTTCTTCCCCTTTTTC
CCCTCTCCCTCCCTTCTATTTTTCCTTCCTCCTTCCCTTCCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_m09.g1 MSMg01no450_m09.g1 CHROMAT_FILE:
MSMg01no450_m09.g1 PHD_FILE: MSMg01no450_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:49 2005
         (242 letters)



>mm_chr10_50895350_50895989
          Length = 640

 Score =  416 bits (215), Expect = e-121
 Identities = 235/243 (96%), Gaps = 4/243 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatttgggcttttgagggggaacagtgagcagctttgctgtttttgctcgcaatgaga 60
           |||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 agtatttgggcttttga---ggaacagtgaacagctttgctgtttttgctcgcaatgaga 257

                                                                       
Query: 61  aaggcatgcgtacatgagaatgctgctaattttaatggccattcagaaagatggattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaggcatgcgtacatgagaatgctgctaattttaatggccattcagaaagatggattaaa 317

                                                                       
Query: 121 ctgggtagcaaaataaatttcaagagtgcttttaatggtgaaacagtcactaactgataa 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 318 ttgggtagcaaaataaatttcaagagtgcttttaatggtgaaacagtcactaactgagaa 377

                                                                       
Query: 181 aaagatgaaagaaaaaaggaagcaaaactactccatctcaaaactgtttt-agggccaag 239
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 378 aaagatgaaagaaacaaggaagcaaaactactccatctcaaaactgtttttagggccaag 437

              
Query: 240 ggt 242
           |||
Sbjct: 438 ggt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 640
Length adjustment: 9
Effective length of query: 233
Effective length of database: 631
Effective search space:   147023
Effective search space used:   147023
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)