BAC Information

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BAC

Clone NameMSMg01-450N10
Chromosome10 (Build37)
Map Location 115,732,971 - 115,733,374
singlet/doubletsinglet
Overlap genenone
Upstream geneRab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
Downstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450N10.T7 (MSMg01no450_n10.b1)MSMg01-450N10.TJ (MSMg01no450_n10.g1)
ACCAG538469AG538470
length789778
length of high quality
(start - end)
238 (82 - 319)516 (76 - 591)
definitionCHROMAT_FILE: MSMg01no450_n10.b1 PHD_FILE: MSMg01no450_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:54 2005CHROMAT_FILE: MSMg01no450_n10.g1 PHD_FILE: MSMg01no450_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTAACATTGGCGGNCGGAAAAAGAATCACTATTCAAAGAAGGAGCCG
CGGAANCAAGGCCTACACCAAAACATGAGAAAAGCAATCTACAGCAAACC
AGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA
AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATA
GTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGG
GATACTAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATA
TGATAGCATATATAAGTGATTTTTCTTTATTCCACCAGAGAACTCCTAAA
CCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACA
AGCCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATT
ATGGAAACAACACCCTTCTCTATAGTCACAAATAATATAAAATATCTCGG
CGTGACTCTAACTAAGGAAGCGAAAGATCTGTATGATAACAACCTCACGT
CTCCGAATACCGATCCTATAGAAGACCCCCCAACATGGGACGATCTCCCC
ACGCCCCCGATTTGTTCGGATTCATCATTGCATACCCGGTCTATCTCTTT
TTTTTTCCCCTCTCTTTTTTTCTCCGCTCTCCCCCCCTTCAATTTTCCTC
TTTTCCTTTCTCCCTTCGCCCCTTTTACCGACTCTTCTCCCTTATCTCCC
CTATTTAATTAACTCTCCCTTCTTCATGCTTGCCCACTC
NGGGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGGACAGAGCATCGTTTTCTC
CTTCTACCAGGGTTCAGAATACAGTAGCATCTCAGTAAATATTTTCTGAG
GGAATGACTGGATCTTTGTAGCTGCTTGGTAAGTGCTGTCATGTGAATAC
GTTCTCTGACAAGCTCTTTAAGTATGGCCCTGGTGCATGCTTCCAAATTC
TGTCCTGAATGGGAAAAGGAGGAATGGAGAGAGAGACAGACAGACAGACA
GACAGAGACAGACAGACAGATTTATGATGGAGACGGACAGAGAGAGATAG
AGAGAGACAGAGAGACACACAGAAACAGAGACAGAGAGACAGAGTCAAGA
GATAGAGAAACACAGAGAGAGACACACACAGAGACAGACACACAGAGAGA
GACAGAAAGGGACCAAGAGAAATAGAGAGACAGAGATATAGACACACAAA
GCAGGGGAGTGGGAGAGAGAATAAAACAGCAAGAGATTGATTTTGAAGGA
AAGATGGAAAAAATAGAATGAAATANAAGTGAGAGCAAAAACTGAAGGAA
AGTGGAGGAGGAGGAAGTATGAGTATCTCTTCCCCCTTTCTCTTTCTTTC
CTCCCTTTTCTCTTTTCTTTTTCTTTCTCTTTCTTCCCTCTCCTCCCTTT
CTTTTTTTTCCTCTCCTTTCCTTCTCTTCTCTTTGTCTTCTTTTCTTTTT
TTCTTCTTCTTCCTCTTTCTTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_n10.g1 MSMg01no450_n10.g1 CHROMAT_FILE:
MSMg01no450_n10.g1 PHD_FILE: MSMg01no450_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:54 2005
         (516 letters)



>mm_chr10_115732971_115733889
          Length = 919

 Score =  526 bits (272), Expect = e-153
 Identities = 370/412 (89%), Gaps = 29/412 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaggacagagcatcgttttctccttctac-cagggttcagaatacagtagcatctca 59
           |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 404 tcttaggacagagcattgttttctccttctgcacagggttcagaatacagtagcatctca 345

                                                                       
Query: 60  gtaaatattttctgagggaatgactggatctttgtagctgcttggtaagtgctgtcatgt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gtaaatattttctgagggaatgactggatctttgtagctgcttggtaagtgctgtcatgt 285

                                                                       
Query: 120 gaatacgttctctgacaagctctttaagtatggccctggtgcatgcttccaaattctgtc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 284 gaatacgttctctgacaagctctttaagtatggccctggtgcatgcttccaaatgctgtc 225

                                                                       
Query: 180 ctgaat--gggaaaaggaggaatggagagagagacagacagacagacagacagagacaga 237
           ||||||  |||||||||||||||||||||||||| ||| ||| ||| ||| ||||| |||
Sbjct: 224 ctgaatatgggaaaaggaggaatggagagagagagagagagagagagagagagagagaga 165

                                                                       
Query: 238 cag------acagatttatgatggagac-g-gacagaga----gagatagagagagacag 285
           |||      |||||   | ||   |||| | ||||||||    ||||  |||||||||||
Sbjct: 164 caggtagagacagac--a-gac--agacagagacagagacacagaga--gagagagacag 112

                                                                       
Query: 286 agagacacacagaa-acagagacagagagacagagtca-agagatagagaaacacagag- 342
           ||||||||| | || ||||||||||||| ||||||||| |||||||||||||||||||| 
Sbjct: 111 agagacacaaa-aagacagagacagagaaacagagtcagagagatagagaaacacagagg 53

                                                               
Query: 343 -agagacacacacagagacagacacaca--gagagagacagaaagggaccaa 391
            |||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 52  gagagacacacacagagacagacacacacagagagagacagaaagggaccaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 919
Length adjustment: 10
Effective length of query: 506
Effective length of database: 909
Effective search space:   459954
Effective search space used:   459954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)