Query= MSMg01no451_j10.b1 MSMg01no451_j10.b1 CHROMAT_FILE:
MSMg01no451_j10.b1 PHD_FILE: MSMg01no451_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:53 2005
(618 letters)
>mm_chr10_113985897_113986913
Length = 1017
Score = 895 bits (463), Expect = 0.0
Identities = 496/511 (97%), Gaps = 9/511 (1%)
Strand = Plus / Plus
Query: 5 gaattcagcagatgtacatgagaaactcattgtttaacctttgcatttaaagtttgctgc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcagatgtatatgagaaactcattgtttaacctttgcatttaaagtttgctgc 264
Query: 65 catcaaactaagccaatgaaatccgaggcatcaggtttagagttaaaggaaaaaaataac 124
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 265 catcaagctaagccaatgaaatccgaggcatcaggtttagagttaaagggaaaaa-taac 323
Query: 125 ttcttggagatcatactagttttaatccacacactccaaacactagggaggtcgaggtag 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 ttcttggagatcatactagttttaatccacatactccaaacactagggaggtcgaggtag 383
Query: 185 aaggattaccttggctacaactgtgaggctctgtctccaaaaaccaaacacacatcatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaggattaccttggctacaactgtgaggctctgtctccaaaaaccaaacacacatcatat 443
Query: 245 aaacggcatccacaaatcagtttgagaagaacagctccataaaacaaacttccccatgtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaacggcatccacaaatcagtttgagaagaacagctccataaaacaaacttccccatgtt 503
Query: 305 cataaaaatatgctgtggtctttcccccgtgagacctacaagaaaattttaactttctcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cataaaaatatgctgtggtctttcccccgtgagacctacaagaaaattttaactttctcc 563
Query: 365 taacaaacactacatcacaggtccatttatcaatgctctaaaccttggttcttgcataaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taacaaacactacatcacaggtccatttatcaatgctctaaaccttggttcttgcataaa 623
Query: 425 cccaccttgccccaatctgcctaatataagaaacaccggttgtagttttatatatacata 484
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccaccttgccccaatctgccaaatataagaaacaccggttgtagttttatatatacata 683
Query: 485 tga-------gtgtgtgtgtaatatatatat 508
| | ||||||||||| |||||||||
Sbjct: 684 t-atgtgtctgtgtgtgtgtagtatatatat 713
Score = 87.7 bits (45), Expect = 2e-21
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 519 acacacacacacacacacacacacacacacacacacatatgtatatata 567
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 753 acacacacacacacacacacacacacacacacacacatatatatatata 705
Score = 83.9 bits (43), Expect = 3e-20
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 519 acacacacacacacacacacacacacacacacacacatatgtatatatata 569
||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 755 acacacacacacacacacacacacacacacacacacacatatatatatata 705
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 518 tacacacacacacacacacacacacacacacacacaca 555
||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tacacacacacacacacacacacacacacacacacaca 729
Score = 72.3 bits (37), Expect = 1e-16
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 519 acacacacacacacacacacacacacacacacacaca 555
|||||||||||||||||||||||||||||||||||||
Sbjct: 761 acacacacacacacacacacacacacacacacacaca 725
Score = 72.3 bits (37), Expect = 1e-16
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 519 acacacacacacacacacacacacacacacacacaca 555
|||||||||||||||||||||||||||||||||||||
Sbjct: 763 acacacacacacacacacacacacacacacacacaca 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_j10.g1 MSMg01no451_j10.g1 CHROMAT_FILE:
MSMg01no451_j10.g1 PHD_FILE: MSMg01no451_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:53 2005
(631 letters)
>mm_chr10_114132015_114133045
Length = 1031
Score = 1174 bits (607), Expect = 0.0
Identities = 625/631 (99%), Gaps = 2/631 (0%)
Strand = Plus / Minus
Query: 2 aaaaaagaaaaaaactaaatagttacaatttgttaaattcatccaatagaaggttgcttg 61
|||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 831 aaaaaa-aaaaaaactaaatagttacaatttgttaatttcatccaatagaagggtgcttg 773
Query: 62 ctaaaaatcaagcttaataactacaatgaccatatgggtagatgcaattagagctcattg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ctaaaaatcaagcttaataactacaatgaccatatgggtagatgcaattagagctcattg 713
Query: 122 catataaggggttgaaggtgctttctagcattgagacacccaggtccttgtgactctttt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 catataaggggttgaaggtgctttctagcattgagacacccaggtccttgtgactctttt 653
Query: 182 aagtaggtaatattgcacacagagctaatgtggatagcctttctctctccaaattggtat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aagtaggtaatattgcacacagagctaatgtggatagcctttctctctccaaattggtat 593
Query: 242 atgtcggatcttaatgaattggcttttctttagatta-ttttttaagattgtatttgtag 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 592 atgtcggatcttaatgaattggcttttctttagattatttttttaagattgtatttgtag 533
Query: 301 tatacagttaagctaataaaaaagtgacagaagagaaacttggtaataatggaaattgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tatacagttaagctaataaaaaagtgacagaagagaaacttggtaataatggaaattgtt 473
Query: 361 ataatagtggaatgctcttgtacgtattcatacttttgcagagcgaatgtgttcagtaat 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ataatagtggaatgctctcgtacgtattcatacttttgcagagcgaatgtgttcagtaat 413
Query: 421 tgttggtcctgcgaataaacacattaatgtattattctaatttgaatgaggctgtgcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgttggtcctgcgaataaacacattaatgtattattctaatttgaatgaggctgtgcttt 353
Query: 481 tggcaggaaatgagctagaacgttccagaatattataaagggtgcacatagccattagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tggcaggaaatgagctagaacgttccagaatattataaagggtgcacatagccattagaa 293
Query: 541 atgttgaagttattttgccttttcagaagggatgtgacgtcataacagctctttgttccc 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 292 atgttgaagttattttgccttttcagaagggatgtgacatcataacagctctttgttccc 233
Query: 601 cactcaccccctgtcaccaattttcttccca 631
|||||||||||||||||||||||||||||||
Sbjct: 232 cactcaccccctgtcaccaattttcttccca 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
