BAC Information

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BAC

Clone NameMSMg01-451O15
Chromosome10 (Build37)
Map Location 12,150,205 - 12,150,899
singlet/doubletsinglet
Overlap geneUtrn
Upstream geneEpm2a, EG666732, LOC100039343
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451O15.T7 (MSMg01no451_o15.b1)MSMg01-451O15.TJ (MSMg01no451_o15.g1)
ACCAG539291AG539292
length761772
length of high quality
(start - end)
343 (74 - 416)695 (74 - 768)
definitionCHROMAT_FILE: MSMg01no451_o15.b1 PHD_FILE: MSMg01no451_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:19 2005CHROMAT_FILE: MSMg01no451_o15.g1 PHD_FILE: MSMg01no451_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGCGGAA
TTCAGAAAATTTTCTGGATACATGGATTGCACAGTAGTACAGAATATACG
CCAACATTCCATAAGGGAGGAATGGCTGCCTAGTGAGGAAATACTGGACC
AAAGCAAGACTGAAACTCAGCGGGGCAAACTCCAAAGCTCCATGTTTGAA
GTCAAGTGGGGCTCCGCTGACTGTAACCTACTTCTATTAGGCTGGCTCAG
CTCACCCTTTTCAGGTCTCTGTGGCAAATCTTCCTTGGGTCTGGAATCCG
AACCCAGTCCAGGCTTCACACTCTGGTTTCTCCAGGTTTTGATGCAGGCA
TTACCCTGTTGCATGTTCAGCAGCTTTCCTTAACCTCAGAGCAAGATTCC
AGGGACCTCTTTTAGTCCTTGCATCCTTTTCCTTGACTTCTAAAGCCCAA
GTTTCTGGCTTTTCTGCCTTGGGGGGGGGAAATCTTGGGGGGCCCTTTGT
GTTTTGGAACCCTGTTTTGTGCAAAAAAAAATTCTTTTTCTTCTCTAAGG
GGGGGGCCCTCTAAAAGGGGGGGGGGGGGAGGTAGGTTTTTCCCCTCTCC
CTTTCGGTGGTGCCTTATTTAAAAAAAGCAGAGGGTTTATGGTATGANGC
GTCNNCCCCCTCCCTTCCTTTCTTCTTTTTTTTCGCCATTATATTTTTAT
GTTTATTTATTATCTGTTTTTTTCCGTTTTTCAACTTTCTTTCCTTCTTT
CTATATTCTCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCCCATTTTTGACAACACAGATGGAC
CTGAGTGAAATGATTCAGATATACAAAGAAAAACATTGCATGGTCTCATT
TATACAAAGAATGTAAATAAGTGAGGAGTTAAGCTGAGAGTGGAGAGGGT
AGAATGGTGATTCTCAAATCTGGAGAGAGGTTCAAAAATAGAAAGCCATC
CAAACTGTCAGTTGTAACAAGAGTGAGTTCCTGAGTCTCCATAGATAGCA
CTGTAGCTATAGTTAAGAGTGTATGTTGGGTCTGGTAGGGCAGCCCTGTA
GTTCTAGATTCTCAGAAGGCTGAGGTTGGCAGACAGCAAGTTCAAGGTCA
AGCTATGCAATTTTGAAACCCTATCTCAAAATAAAAATGCCTTTTAAAAG
ATCTGGGACGGAGCTCAGAAGAAAAGTGGTTTCCTAGCACGTGTGAGACC
CTGAGATTGGTCCCCAGTAATGCCAATACCAAAATCAAAACCCAGTCTAA
CAAAAATGTTGTATGGATGAAATAGTAAAATAACTTTTTTTTAAAAAAGA
ACTTTCAAATTCTCTAATTACATGAATGATTTTTCTAATTCAAATTAAAT
TTTGGTTATTTACAGCAGCAATTATTTAAAGGAGACTGAATTTTCATTAC
AGAGACAAATGATTTTATTTTTTAGATGTGCTGGGAATTTTATCTGAAGG
CAACAGTGTTTAAAAGTAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_o15.g1 MSMg01no451_o15.g1 CHROMAT_FILE:
MSMg01no451_o15.g1 PHD_FILE: MSMg01no451_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:20 2005
         (695 letters)



>mm_chr10_12150005_12151099
          Length = 1095

 Score = 1313 bits (679), Expect = 0.0
 Identities = 691/695 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccatttttgacaacacagatggacctgagtgaaatgattcagatatacaaagaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccatttttgacaacacagatggacctgagtgaaatgattcagatatacaaagaaaaa 260

                                                                       
Query: 61  cattgcatggtctcatttatacaaagaatgtaaataagtgaggagttaagctgagagtgg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattgcatggtctcatttatacaaagaatgtaaataagtgaggagttaagctgagagtgg 320

                                                                       
Query: 121 agagggtagaatggtgattctcaaatctggagagaggttcaaaaatagaaagccatccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagggtagaatggtgattctcaaatctggagagaggttcaaaaatagaaagccatccaa 380

                                                                       
Query: 181 actgtcagttgtaacaagagtgagttcctgagtctccatagatagcactgtagctatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtcagttgtaacaagagtgagttcctgagtctccatagatagcactgtagctatagt 440

                                                                       
Query: 241 taagagtgtatgttgggtctggtagggcagccctgtagttctagattctcagaaggctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagagtgtatgttgggtctggtagggcagccctgtagttctagattctcagaaggctga 500

                                                                       
Query: 301 ggttggcagacagcaagttcaaggtcaagctatgcaattttgaaaccctatctcaaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttggcagacagcaagttcaaggtcaagctatgcaattttgaaaccctatctcaaaata 560

                                                                       
Query: 361 aaaatgccttttaaaagatctgggacggagctcagaagaaaagtggtttcctagcacgtg 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatgccttttaaaagatctgggatggagctcagaagaaaagtggtttcctagcacgtg 620

                                                                       
Query: 421 tgagaccctgagattggtccccagtaatgccaataccaaaatcaaaacccagtctaacaa 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagaccgtgagattggtccccagtaatgccaataccaaaatcaaaacccagtctaacaa 680

                                                                       
Query: 481 aaatgttgtatggatgaaatagtaaaataacttttttttaaaaaagaactttcaaattct 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 aaatgttgtatggatgaaatagtaaaataactttttttaaaaaaagaactttcaaattct 740

                                                                       
Query: 541 ctaattacatgaatgatttttctaattcaaattaaattttggttatttacagcagcaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaattacatgaatgatttttctaattcaaattaaattttggttatttacagcagcaatt 800

                                                                       
Query: 601 atttaaaggagactgaattttcattacagagacaaatgattttattttttagatgtgctg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttaaaggagactgaattttcattacagagacaaatgattttattttttagatgtgctg 860

                                              
Query: 661 ggaattttatctgaaggcaacagtgtttaaaagta 695
           |||||||||||||||||||||||||||||||||||
Sbjct: 861 ggaattttatctgaaggcaacagtgtttaaaagta 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)