Query= MSMg01no452_f03.b1 MSMg01no452_f03.b1 CHROMAT_FILE:
MSMg01no452_f03.b1 PHD_FILE: MSMg01no452_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:50 2005
(621 letters)
>mm_chr10_39114834_39115855
Length = 1022
Score = 1133 bits (586), Expect = 0.0
Identities = 610/618 (98%), Gaps = 1/618 (0%)
Strand = Plus / Minus
Query: 5 gaattc-aaaaatatgcagccactcttgcagagagagcggaggagtagtctcttcaccca 63
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 734 gaattcaaaaaatatgcagccactcttgcagagagcgcggaggagtagtctcttcaccca 675
Query: 64 gtccaccagctgctttctgggtagctcagccctttctaagcttccagatctgctccagtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtccaccagctgctttctgggtagctcagccctttctaagcttccagatctgctccagtg 615
Query: 124 ttattccgtcacactttattgcctaagtgggtccctgtcacatccttttttgcctcaaat 183
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcattccatcacactttatcgcctaagtgggtccctgtcacatccttttttgcctcaaat 555
Query: 184 gagttcaatataatatctaaaacccagtgggcacacacacacaaatgttaactgaatgaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gagttcaatataatatctaaaacccagtgggcacacacacacaaatgttaactgaatgaa 495
Query: 244 agaatggcctattacccaatagccataattcaaagacacagcttgggcacagtgagcatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agaatggcctattacccaatagccataattcaaagacacagcttgggcacagtgagcatt 435
Query: 304 agccgtcgggggtggaagagaaggtaacatggaacagactaatagggagactttcactca 363
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 434 agccgtcgggggtggaagagaaggtgacatggaacagactaatagggagactttcactca 375
Query: 364 tttaaaggcagagccctgctttggaaggctctgcacccatccctcagccgttccatttta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttaaaggcagagccctgctttggaaggctctgcacccatccctcagccgttccatttta 315
Query: 424 cttaggaagaggaaacctaacttggagctaaaacattgaagtgaactggggtattctatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cttaggaagaggaaacctaacttggagctaaaacattgaagtgaactggggtattctatt 255
Query: 484 ttgtatgccaattttacctctaagtcagcttctctcttagaaacctatgaggcttggcag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttgtatgccaattttacctctaagtcagcttctctcttagaaacctatgaggcttggcag 195
Query: 544 ggccatgcctgtaaccccagcacttggaggtaacggcaggagaatcatgagttcaaggtc 603
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 194 gaccatgcctgtaaccccagcacttgcaggtaacggcaggagaatcatgagttcaaggtc 135
Query: 604 atcctccggtacatagtg 621
||||||||||||||||||
Sbjct: 134 atcctccggtacatagtg 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_f03.g1 MSMg01no452_f03.g1 CHROMAT_FILE:
MSMg01no452_f03.g1 PHD_FILE: MSMg01no452_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:50 2005
(553 letters)
>mm_chr10_38985435_38986388
Length = 954
Score = 913 bits (472), Expect = 0.0
Identities = 522/554 (94%), Gaps = 27/554 (4%)
Strand = Plus / Plus
Query: 1 ctctccctaaccctgcctttatggtatttctaccttcaatctctccttaattatttaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctccctaaccctgcctttatggtatttctaccttcaatctctccttaattatttaact 260
Query: 61 ttcaaagttgtgtgggtgtgtgtgtttaagtcttggtgggtgagaaaaa-ttttttaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ttcaaagttgtgtgggtgtgtgtgtttaagtcttggtgggtgagaaaaaattttttaaaa 320
Query: 120 agaagaaattaataaaggggtttgggttgatgctcagtgagtaaaagtacttgctacaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagaaattaataaaggggtttgggttgatgctcagtgagtaaaagtacttgctacaca 380
Query: 180 agtgtaaggatcgaagttcaaatcttaaagccaacttaaagccagaagagtatctgtaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgtaaggatcgaagttcaaatcttaaagccaacttaaagccagaagagtatctgtaat 440
Query: 240 tccagcatgcctacagccagatgggaggtggagaaaggagactcacccagaagttcttgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagcatgcctacagccagatgggaggtggagaaaggagactcacccagaagttcttgg 500
Query: 300 gtcagctagcctggcatacacagcggtgaacaagagacagacagacagacagtatctctc 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 501 gtcagctagcctggcatacacagcggtgaacaagagacagatagacagacagtctctctc 560
Query: 360 tgtctctgtctctctctctctctctgtctctgtttctgtctctctctgtctctctgtctc 419
||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 561 tgtctctgtctct------------gtctctgt--ctgtctctctctgtctctctgtctc 606
Query: 420 tctctctctctctctctctctctctctctctctcacacacacacattacaaaaccaagtc 479
|||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 607 tctctctctctctctcacacac------------acacacacacattacaaaaccaagtc 654
Query: 480 agaaaggaagatatgtcactggtttgaatatgaaatattctctatagtctcatgtgtgta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agaaaggaagatatgtcactggtttgaatatgaaatattctctatagtctcatgtgtgta 714
Query: 540 cagatgccctgaga 553
||||||||||||||
Sbjct: 715 cagatgccctgaga 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
