Query= MSMg01no452_h18.b1 MSMg01no452_h18.b1 CHROMAT_FILE:
MSMg01no452_h18.b1 PHD_FILE: MSMg01no452_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:03 2005
(632 letters)
>mm_chr10_78341125_78342159
Length = 1035
Score = 911 bits (471), Expect = 0.0
Identities = 582/623 (93%), Gaps = 11/623 (1%)
Strand = Plus / Minus
Query: 6 aattcttcttgtgctgttgcctgattcca----tcagtcacatgtgtctatgagacaaga 61
|||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 824 aattcttcttgttctgttgcctgattccatcagtcagtcacatgtgtctatgagagaaga 765
Query: 62 taaagacaagatagcatgactattctcacattgatgtagattatatgctaaattttatgt 121
||||| ||||||| | ||| ||||||||| |||| || || |||||||| ||||||| |
Sbjct: 764 taaaggcaagataacgggacaattctcacactgatataaataatatgctacattttatat 705
Query: 122 tttcagcaaattaacttctg-aattgtttccaagaaattattcttcttatggagtctctg 180
||| | ||||||||| |||| ||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 704 tttgaacaaattaacctctgtaattgtttccaaggaattgttcctcttatggagtctctg 645
Query: 181 atgttaatcttgatagacattcctttcactctctg--aaccttttattaaaagtcatgta 238
||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||
Sbjct: 644 atgttaatcttgatagacattcctttcactctctgaaaac--ttcattaaaagtcgtgta 587
Query: 239 ttctacagttttaatgagaaattattatgaatacatgatgttactgctaaatatgattca 298
|| |||| ||||||||||||||||||||||||||| ||||||||| | | |||||||||
Sbjct: 586 ttttaca--tttaatgagaaattattatgaatacataatgttactgttgagtatgattca 529
Query: 299 ggcagtgtttagggaatttatagaggttgataaaaacaaagagaacttagtgtgtatgaa 358
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 528 agcagtgtttaggaaatttatagaggttgataaaaacaaagagaacttagtgtatatgaa 469
Query: 359 tgaaaagattataggaaaataaagaaatcttgtttactaccttttgggatgatagcatga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgaaaagattataggaaaataaagaaatcttgtttactaccttttgggatgatagcatga 409
Query: 419 catacatttgtctatgtacacattcagcaaaatttacccttttaataaatgtgaacatac 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 408 catacatttgtctatgtacacattcagcaaaatttacccttttaataaatttgaacatac 349
Query: 479 acagagagaggaagagagagaaatagaataaaaacaaaactatttaaaaacaattaccct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acagagagaggaagagagagaaatagaataaaaacaaaactatttaaaaacaattaccct 289
Query: 539 ataacatgacaaggagtggtgatgcagtgaagagtatgaaagcaggtataactgtttttg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ataacatgacaaggagtggtgatgcagtgaagagtatgaaagcaggtataactgtttttg 229
Query: 599 gttttggttttggttttggtttt 621
|||||||||||||||||||||||
Sbjct: 228 gttttggttttggttttggtttt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1035
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1025
Effective search space: 637550
Effective search space used: 637550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_h18.g1 MSMg01no452_h18.g1 CHROMAT_FILE:
MSMg01no452_h18.g1 PHD_FILE: MSMg01no452_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:03 2005
(625 letters)
>mm_chr10_78184613_78185637
Length = 1025
Score = 1154 bits (597), Expect = 0.0
Identities = 618/625 (98%)
Strand = Plus / Plus
Query: 1 acccatgcatttcttttgagcacccctttgtggggagccactgatggagctgtgactgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 201 acccatgcatttcttttgagcacccctttgtggggagccactgatggagctatgactgtg 260
Query: 61 tcaagcctcacaccagtggtgcggagcgtgccaagtccatagcagcattgctttctcgcc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tcaagcctcacaccagtggtgcggagcgtgccaagtccacagcagcattgctttctcgcc 320
Query: 121 ctttctatcttggtcattgcagtatgtgagcaacctttgggctctggaagctgcacaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttctatcttggtcattgcagtatgtgagcaacctttgggctctggaagctgcacaata 380
Query: 181 tttcattgagtgggtgtcaggaatttgtttagtcattcctctgctgatggatgtttcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcattgagtgggtgtcaggaatttgtttagtcattcctctgctgatggatgtttcagg 440
Query: 241 aatttcttgtttttcttcatgacaaggaaaagctgccacgggcaactttacacatgcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttcttgtttttcttcatgacaaggaaaagctgccacgggcaactttacacatgcctc 500
Query: 301 tttaagcacaaggtcgaatatctctgctttcttccaaaattaaaaatatgtacacactta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaagcacaaggtcgaatatctctgctttcttccaaaattaaaaatatgtacacactta 560
Query: 361 cttattttcatgtgtgtatgtgagcatgtgcatgtgccacaactcctgggagtcagttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttattttcatgtgtgtatgtgagcatgtgcatgtgccacaactcctgggagtcagttct 620
Query: 421 atccttctatcatgtgggtcttataaatctcttttaggtcatcaggtttggcagcaagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atccttctatcatgtgggtcttataaatctcttttaggtcatcaggtttggcagcaagtg 680
Query: 481 aatgcctttacctgctaagccatctcacttgtccctaagagttttctgaaggtaaagttc 540
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 aatgcctttacctgctaagtcatctcacttgtcccgaagagttttctgaaggtaaagttc 740
Query: 541 ctagaagtagcgttattggtttccagatcattaaacactttgacatattctgcctgtcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagaagtagcgttattggtttccagatcattaaacactttgacatattctgcctgtcat 800
Query: 601 cattcctccagtcactttaccattt 625
|||||||||| |||||||||||||
Sbjct: 801 tattcctccagccactttaccattt 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
