BAC Information

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BAC

Clone NameMSMg01-453A13
Chromosome10 (Build37)
Map Location 37,825,503 - 37,826,197
singlet/doubletsinglet
Overlap genenone
Upstream geneMarcks, LOC100040846
Downstream geneLOC100040915, Lama4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453A13.T7 (MSMg01no453_a13.b1)MSMg01-453A13.TJ (MSMg01no453_a13.g1)
ACCAG540144AG540145
length751758
length of high quality
(start - end)
704 (48 - 751)681 (78 - 758)
definitionCHROMAT_FILE: MSMg01no453_a13.b1 PHD_FILE: MSMg01no453_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:46 2005CHROMAT_FILE: MSMg01no453_a13.g1 PHD_FILE: MSMg01no453_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTTTTTAACAGCTGAGTAGTACTCCATTGTGTAAATGTAT
CACATGTTCTGTGTCCATTCCTCTGTTAAGGGACATCTGGCTTCTTTCCA
CCTCCTGGCTATTATAAATAAAGCCTTCTATGAACATAGTGGAGCATGTG
TCTTTGTTGTATGTTGAGAATTTTTTGGGTATATGCCCAGGAGTGGTATA
GCTGGTTCCTCGGGTAGTACTATGTCTAGTTTTCTGAAGAACCACCAGAC
TGATTTCAACAGTAGTTCTAACCAGCTTGCAATCCCTCCAATGATGGAGG
AGTCTTCCTTTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTT
TTGGATCTTAGCCATTCTGACTGCATAAGGTAGAATCTCAGGATTGTTTT
GATTTGCATTTCCCTGATGACTAAAGATGTTTAACATTTCTTTAGGTGAT
TCATAGCCATTCATTATTCCTCAGTTGAGAACTCTTTGTTTAGCTCTGTA
TTCCATTTTTAATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGT
TCCTTGTATATATATATTGGATATTAGTCTTCTATCCTGTGTAGTTAATT
TTATATCTGGCCACTTTGGTGAAGTTGTTAATCAGGTTTAGGAGTTCTCT
GGTGGAATTTTTGGGGTTATTTAAGTATACTATCATATCATCTGCAATTA
G
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGTTATCTTGAAAATGAAG
AAAAACCATTTTCTGCATACAAAAGCTGTCTCTCAGATGATCATCTGTCA
TAGATTATTGTTGCCTTCCAAGATACTAGGTTAAAATATTTAGCTTATCC
TCATAAAATATTCCCATTGAAATTAGGTGGGGTTCTGATTGATTTAATGC
TGGATTGTGGCTCATTACAGCATAGGAAATTGCAAACTTTTATGAAATAC
TTGAAATTAGAATTGACACACCCATAATGTTCACTGGAAAACAATATAAT
TAAAACCACTCTGATAAATCACATGACCTTGACTTAAAGTGAAATTAAAT
TTAAACGACTCAGTAAAAGCTGTTTATCTTTGCCTTTTCATGTTTTTGCC
ATTCTTCTCCAATACAAAAAAAAAACACGTCAAATGTCTTCTTTTTTTGC
AATCAGTCCAAACATCTGGGTGTGTGTTTCTACAGTCCAAACCCTCCAAC
TTGAGTGTGGGTCACTTCCTGAGGGCTAATGTTCTGTGCAGACACTATAG
GTACAGCAGAACCTCACTTGATTTAGATAAAATATTTTTAGAAGTCATTT
CCAAATAATGTATACTCTAGTTTAAGCTCTTCTTCCTTTTTTAAAGATTC
TAATACAATTGCATACTTTTAATCTAAATTCTTTATTTCATATCTGTTAA
TGAGAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_a13.g1 MSMg01no453_a13.g1 CHROMAT_FILE:
MSMg01no453_a13.g1 PHD_FILE: MSMg01no453_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:46 2005
         (681 letters)



>mm_chr10_37825318_37826398
          Length = 1081

 Score = 1266 bits (655), Expect = 0.0
 Identities = 678/695 (97%), Gaps = 15/695 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttagttatcttgaaaatgaagaaaaaccattttctgcatacaaaagctgtctctcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttttagttatcttgaaaatgaagaaaaaccattttctgcatacaaaagctgtctctcaga 245

                                                                       
Query: 61  tgatcatctgtcatagattattgttgccttccaagatactaggttaaaatatttagctta 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 246 tgatcatctgtcatagattattgttgccttccaagatactaggttcaaatatttagctta 305

                                                                       
Query: 121 tcctcataaaatattcccattgaaattaggtggggttctgattgatttaatgctggattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcctcataaaatattcccattgaaattaggtggggttctgattgatttaatgctggattg 365

                                                                       
Query: 181 tggctcattacagcataggaaattgcaaacttttatgaaatacttgaaattagaattgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggctcattacagcataggaaattgcaaacttttatgaaatacttgaaattagaattgac 425

                                                                       
Query: 241 acacccataatgttcactggaaaacaatataattaaaaccactctgataaatcacatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acacccataatgttcactggaaaacaatataattaaaaccactctgataaatcacatgac 485

                                                                       
Query: 301 cttgacttaaagtgaaattaaatttaaacgactcagtaaaagctgtttatctttgccttt 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 486 cttgacttaaagtgaaattaaatttaaacgactcagcaaaagctgtttatctttgccttt 545

                                                                       
Query: 361 tcatgtttttgccattcttctccaatacaaaaaaaaaa---------------cacgtca 405
           ||||||||||||||||||||||||||||||||||||||               |||||||
Sbjct: 546 tcatgtttttgccattcttctccaatacaaaaaaaaaaaaaaaaaaaaaaaaacacgtca 605

                                                                       
Query: 406 aatgtcttctttttttgcaatcagtccaaacatctgggtgtgtgtttctacagtccaaac 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aatgtcttctttttttgcaatcagtccaaacatctgggtgtgtgtttctacagtccaaac 665

                                                                       
Query: 466 cctccaacttgagtgtgggtcacttcctgagggctaatgttctgtgcagacactataggt 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cctccaacttgagtgtgggtcacttcctgagggctaatgttctgtgcagacactataggt 725

                                                                       
Query: 526 acagcagaacctcacttgatttagataaaatatttttagaagtcatttccaaataatgta 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acagcagaacctcacttgatttagataaaatatttttagaagtcatttccaaataatgta 785

                                                                       
Query: 586 tactctagtttaagctcttcttccttttttaaagattctaatacaattgcatacttttaa 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tactctagtttaagctcttcttccttttttaaagattctaatacaattgcatacttttaa 845

                                              
Query: 646 tctaaattctttatttcatatctgttaatgagagt 680
           |||||||||||||||||||||||||||||||||||
Sbjct: 846 tctaaattctttatttcatatctgttaatgagagt 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)