BAC Information

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BAC

Clone NameMSMg01-453J20
Chromosome10 (Build37)
Map Location 50,974,909 - 50,975,504
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1, LOC268300
Downstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453J20.T7 (MSMg01no453_j20.b1)MSMg01-453J20.TJ (MSMg01no453_j20.g1)
ACCAG540585AG540586
length762766
length of high quality
(start - end)
662 (49 - 710)597 (79 - 675)
definitionCHROMAT_FILE: MSMg01no453_j20.b1 PHD_FILE: MSMg01no453_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:33 2005CHROMAT_FILE: MSMg01no453_j20.g1 PHD_FILE: MSMg01no453_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCCATACCTAAACATGATTAAAACAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTTAATGGTGCGAAGCTGAAAACATTCCCACTA
AAATCAGGGAATAGACAAGGCTGTCCACTTTCTCCCTACCTATTCAACAT
TGTACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATAAATG
TGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTCTGCAGATGAT
ACGATAGTATACATAAATGACCCTAAAAATTCCACCACAGAACTCCTAAA
CCTGATAAACAGCTTCAGTGAAGTACCTGGATATAAAATTAACTCAAAGA
AGTCAATGGCCTTTCTCTACACAAAGGATAAACAGGCTGAAAGAGAAATT
AGTGAAACAACAGCCTTCACAATAGTCACAGATAATATAAAATACCTTGT
CATGACTCTATCTAAGGAACGGAAGATCTGTACGATAAAAACTTCAAGTC
TCCGAAGAAAAAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCAT
GCTCATGCATGGGCAGGATCAATATAGTAAAAATGGCCATGTTGCCAAAA
GCAATCTAGAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTT
CAACGAATTAGAAAGAGCAATCTGCAAATTCATCTGGTATAACAAAAAAA
TCTAGGATAGCA
NNCCCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTGGTCTTATCTACAAATA
CCTCATGGTCTCTTTAAGAAACTTATAATACCAAGAGATCAAATCACGAA
GTTCTGGACTGTCCACGTAGGCAGCCATTGCATGACTTCTGATGGAGTTC
CCAAAGTCTTCCAGGTTACAAAGTTGTCCCGAAGGACAAGATTGCAAAAC
TATCTAGACAGAAACTTGGGTTCTGGGAATAAGAAAATAAATCTCACTAT
GTTAACAATAGGTTAGGGAAAGGTAGAATTCCATAATTCCCTTGCTGCTA
CCCAGAGCTATTATGGAGATGAACTTCCAAGGGCTGAGCTACACAACCCT
AAGTCTTCCTCTGCTGGAGAGAGGGATTGGAGTTGTAGAGCATTTGAGAC
CTGGGTGAAGGAGAGGCAGAGGAGGACAATACGTCTGCCTTGACATGAGG
CACAGAATAGAATTCTGGGTCTGGAGTAGATTTACCATGCAACTTGAGAA
AATTACCTTCTTAGTCTTTTCAGTATCCATGTTCCCCTCTATAAAATGGG
ACTACTGATGTTTTCTTTGGTAGATTGTTGTATGAATTAGACATGGTAGA
AGAAATGTTGTCTGGCATCTGGTANGTACTCCACAAGGTATAAAATAAGA
CATAGCTATTAGCAAGGATGTGTTAAATATTTTTTGAGAGATATTCACAG
CTGACATGGAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_j20.g1 MSMg01no453_j20.g1 CHROMAT_FILE:
MSMg01no453_j20.g1 PHD_FILE: MSMg01no453_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:33 2005
         (597 letters)



>mm_chr10_50974874_50975870
          Length = 997

 Score = 1137 bits (588), Expect = 0.0
 Identities = 594/596 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtggtcttatctacaaatacctcatggtctctttaagaaacttataataccaagaga 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 631 atggtggtcttatctacaaatacctcatggtctctttaggaaacttataataccaagaga 572

                                                                       
Query: 61  tcaaatcacgaagttctggactgtccacgtaggcagccattgcatgacttctgatggagt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 571 tcaaatcacgaagttctggactgtccatgtaggcagccattgcatgacttctgatggagt 512

                                                                       
Query: 121 tcccaaagtcttccaggttacaaagttgtcccgaaggacaagattgcaaaactatctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcccaaagtcttccaggttacaaagttgtcccgaaggacaagattgcaaaactatctaga 452

                                                                       
Query: 181 cagaaacttgggttctgggaataagaaaataaatctcactatgttaacaataggttaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagaaacttgggttctgggaataagaaaataaatctcactatgttaacaataggttaggg 392

                                                                       
Query: 241 aaaggtagaattccataattcccttgctgctacccagagctattatggagatgaacttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaaggtagaattccataattcccttgctgctacccagagctattatggagatgaacttcc 332

                                                                       
Query: 301 aagggctgagctacacaaccctaagtcttcctctgctggagagagggattggagttgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagggctgagctacacaaccctaagtcttcctctgctggagagagggattggagttgtag 272

                                                                       
Query: 361 agcatttgagacctgggtgaaggagaggcagaggaggacaatacgtctgccttgacatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agcatttgagacctgggtgaaggagaggcagaggaggacaatacgtctgccttgacatga 212

                                                                       
Query: 421 ggcacagaatagaattctgggtctggagtagatttaccatgcaacttgagaaaattacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggcacagaatagaattctgggtctggagtagatttaccatgcaacttgagaaaattacct 152

                                                                       
Query: 481 tcttagtcttttcagtatccatgttcccctctataaaatgggactactgatgttttcttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tcttagtcttttcagtatccatgttcccctctataaaatgggactactgatgttttcttt 92

                                                                   
Query: 541 ggtagattgttgtatgaattagacatggtagaagaaatgttgtctggcatctggta 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ggtagattgttgtatgaattagacatggtagaagaaatgttgtctggcatctggta 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)