BAC Information

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BAC

Clone NameMSMg01-453M06
Chromosome10 (Build37)
Map Location 104,195,155 - 104,195,810
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453M06.T7 (MSMg01no453_m06.b1)MSMg01-453M06.TJ (MSMg01no453_m06.g1)
ACCAG540701AG540702
length7461,447
length of high quality
(start - end)		658 (52 - 709)---
definitionCHROMAT_FILE: MSMg01no453_m06.b1 PHD_FILE: MSMg01no453_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:44 2005CHROMAT_FILE: MSMg01no453_m06.g1 PHD_FILE: MSMg01no453_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAATATCTTTCACTCAGCCACATGAAAATGATTTTCTA
TATTCCATAATCTTTTTTATTTGCCCGTATCTCTACAACTTCAAAATTAT
AGCAAAGTGATTGAACGATTATAGTGTGAGTAAAAACAGTACATATATTG
TGAAGGGCAAAATAATATAATTTAAATGGTAACCCCTTTGTTAATTCATC
TGAAAATAACTACACATTAAAAAACAACTTTTCAGTATAACTTTGTCTAG
TGATGCAGTTAATTTTTTCTTAACTTCTGTGATTATACATCTTCCTACCA
CTATTCTTGTTTTTAATTAGGTATTTTCCTCATTTACATTTCCAATGCTA
TCCCAAAAGTTGCCCATATCCTCCCCCCACTCCCCTACCCACCCACTCCC
ACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAG
TCCAATGGGCCCCTCTTTCCAGTGATGGTCGAGTAGGCCATCTTTTGATA
CATATGCCTATTTATTTTATTCATTGAGAGAATAATGGTAGCATTGATTC
CTTCCTTTCCTCACTCCTATCCCTCCCATGGATACTTACTTGTTCTTTTC
AAATGAACGGTATCATATAAATTTATATTTATAAATCTAACATCCTCTAC
TTTTAAGAAAGAAGTCAAACTATTTAAAGTCTTGTTTAATGAATAN

GCACTGTGTCTAGTTGCGTGGCGCGCTGGCGCGTCGCGGCGCGCGGATCT
CTCCGCGTGTATTTCTCTCGCACATATCAAGGGGNNNNTCCTCCTCTCTG
TTGTGAGTCGTTCGTCTATCGCGAAATTGGCGTTCGCTATCGATTCAGTA
TGTTTATCTGCCTCTCCTCTCGCCGTATCNACATGGACGCGAGAGTGCTT
AGTTGATAGGACGCTGCGCTGTAGAGATCGCTCTGAGCTTCGTTAATCGG
GTCGCCAGCCGGTGCGTGTGGCACTTCTCCGTCGCCTCGCTCCTCTTGCG
CGCTGATAATATGTCTTTTAGCTGCGGGTAGTCATTCTCAGCCATACCTG
CTTCGAGGATGAATCTCGACGCGCTAGGAGTAGCGGCACTGTATACGTAC
TTGCAGCGCCACCTGCTGATCGCATCTACGCCGCGCGCGCGTTACAATGG
TTAGTGTCGCTCTAGTTAGTATTCTACACGAGGGCGATAGACACAACTTG
CGCGCGATATTTCTCACGTTCAGTGGCCCTATTATGTTCCATCCCGAGCG
TGCATTACGGCGTCACAACCGAGNACCTAGAGGACAGCACTCTAATTGTA
CTAATGTGATCATGTCTTCAGACGGAGACTTTATTGCGCAGTTGCGTNTA
CTNGGCACTATCCGCGATCGAGCGCTAGTTTTATGATTTGTCGTAGAANA
ACATGTCTAGAGCGTGATGAGCGCGACGCATTCAATCATAATGATAGACC
GCTTGTCGTGATTACTCCGCTTATCTAACGATCGCGGCCTGAGAGTTGTG
TTGTATACAACGCTCACTGCCTCTGCGATAGCATCGCGACGCTTGCTGTC
TATACGCCGGCGCGGCACAGATTTGCGCATCGGTGTCCATATATGTCAGG
CGCGACGGCTTGATTTCGGGNGCTTTGTATTGATGTGTGTAAATGACTAC
TGCTCANTCTAACATAGCCGCCGTTGATAGTTCATGAGGGGTACACGTTC
TATTATATGCGGAGAACACCCGAGGCGTAGTAGTCTAGCCGCGGAATAGA
ATTTGTATGACATACAAGAGCTAGTACATAACGGAAATGGGCTTGCGCGC
GCGATTGTAGATAGATATTGACTTATGTGGACGCGCCGAGCGCGTGACAC
ACACAACATCTACATAGTGTGTTCGCTCGATGCGCGCGTCAGCTCTGCTC
AGCCATGTATTTGTGNTAGTAATGCGGATNGATTCACACGNACATGCGTG
GCGCGTCGTGACACATGCTAATATGCAGTCTTGGANTCTCGATATAGGAT
AGTATAGGTCCCACACGCGCGACGATCGCCGTCGAGACGCGCTCGTCCAT
AATGATGTCGTTATTCTCTATGCGCTTCGCGCTGAGTATCATACTATGTG
ACGATGTTGTCTCTCTCTGCGATCACCGTATGGCTCTAGTACACCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_m06.b1 MSMg01no453_m06.b1 CHROMAT_FILE:
MSMg01no453_m06.b1 PHD_FILE: MSMg01no453_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:44 2005
         (658 letters)



>mm_chr10_104194953_104196010
          Length = 1058

 Score = 1230 bits (636), Expect = 0.0
 Identities = 651/656 (99%), Gaps = 1/656 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaaatatctttcactcagccacatgaaaatgattttctatattccataatctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccaaatatctttcactcagccacatgaaaatgattttctatattccataatctt 262

                                                                       
Query: 64  ttttatttgcccgtatctctacaacttcaaaattatagcaaagtgattgaacgattatag 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttatttgcccgtgtctctacaacttcaaaattatagcaaagtgattgaacgattatag 322

                                                                       
Query: 124 tgtgagtaaaaacagtacatatattgtgaagggcaaaataatataatttaaatggtaacc 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtaagtaaaaacagtacatatattgtgaagggcaaaataatataatttaaatggtaacc 382

                                                                       
Query: 184 cctttgttaattcatctgaaaataactacacattaaaaaacaacttttcagtataacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 383 cctttgttaattcatctgaaaataactacacattaaaaaacaacttttcagtataactta 442

                                                                       
Query: 244 gtctagtgatgcagttaattttttcttaacttctgtgattatacatcttcctaccactat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtctagtgatgcagttaattttttcttaacttctgtgattatacatcttcctaccactat 502

                                                                       
Query: 304 tcttgtttttaattaggtattttcctcatttacatttccaatgctatcccaaaagttgcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcttgtttttaattaggtattttcctcatttacatttccaatgctatcccaaaagttgcc 562

                                                                       
Query: 364 catatcctccccccactcccctacccacccactcccacttttt-ggccctggcattcccc 422
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 563 catatcctccccccactcccctacccacccactcccacttttttggccctggcattcccc 622

                                                                       
Query: 423 tgtactggggcatataaagtttgcaagtccaatgggcccctctttccagtgatggtcgag 482
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 623 tgtactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggtcgag 682

                                                                       
Query: 483 taggccatcttttgatacatatgcctatttattttattcattgagagaataatggtagca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taggccatcttttgatacatatgcctatttattttattcattgagagaataatggtagca 742

                                                                       
Query: 543 ttgattccttcctttcctcactcctatccctcccatggatacttacttgttcttttcaaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttgattccttcctttcctcactcctatccctcccatggatacttacttgttcttttcaaa 802

                                                                   
Query: 603 tgaacggtatcatataaatttatatttataaatctaacatcctctacttttaagaa 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgaacggtatcatataaatttatatttataaatctaacatcctctacttttaagaa 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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