BAC Information

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BAC

Clone NameMSMg01-454G09
Chromosome10 (Build37)
Map Location 72,584,379 - 72,584,695
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneLOC100040505, Zwint
Downstream geneLOC544705, LOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454G09.T7 (MSMg01no454_g09.b1)MSMg01-454G09.TJ (MSMg01no454_g09.g1)
ACCAG541184AG541185
length749723
length of high quality
(start - end)
546 (67 - 612)317 (121 - 437)
definitionCHROMAT_FILE: MSMg01no454_g09.b1 PHD_FILE: MSMg01no454_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:34 2005CHROMAT_FILE: MSMg01no454_g09.g1 PHD_FILE: MSMg01no454_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGAATCACTCTCTAAGCAGTTTGGCTAGGGGCTGGGACCACAGC
AATAGCAAGAGAAAACATGCAAGGTGTCCTGGCTGGTTTTGTGTTCAACT
TGACACAAGCTGTGGTTATCACAGAAAAAGGAGCCTCTCTTGAGAAAATG
CCTCCAAGATATCCAGCTCTAAGGCATTTTCTCAATTAGTGATCAAGGAA
GAAGGGCCCCTTTAGGGTGGGGTAATCTCTGGGCTGGTACTCTTGTGTTC
TATAAGAGAGCAAGCTTATCAAGCCAGGGAAAGTAAGCCAGTAAAGAAAA
TCCCTCCATGGCCTCTGCATTAGCTCCTGCTTCCTGACCTCAGTAGTTCC
AGTCCTGACTTCCTTGGTAATGAACAGCAATGTAGAAGTGTGAAGCCACA
ATTACTCTGATACCTAAACCACAAAAAGATCCCACAAAGAAAGAGAACTT
CAGACCAATATCCCTTATGAATATTGATGCAAAAATCCTCAATAAAGTTC
TTGCTAACCGAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAA
GTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATATACAGAAATCTTT
TCTCATAATCCAGTATATACATTAACTCTAGGACTAAAAACCCCTGAATC
TCTCATTAGATGCTGAGAAATATTTTGACATAATCCAACACCCTTTTTG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGGAAGAGCTTGGGACTGGTGGCTT
CCATTAGTCCCAAGATAGAAGCCTAGGTGGTCAGGATTGCTTTAATCAGA
CTTGAAATCAAGGTTTTGAGATTGTATTAGTTAAATGAGAGTTCCAACAC
CAGCTGGGACATGGATAAGTGACATCGTCTCCACACAAAATTTTCGAATA
ACCAATAGCAGATAGTCCATATCCATCAGAGGGGCTTATTATAACTAAGT
CTTGTATATTTCTGTGTTGTTCGAATGAAAGATTCACTTTAGCATTAGAA
GACTTTGAATATTTGTTTTGATGGCTGGCAATGGCTATAATCATGATGGT
GGTTACCATGCCAATGATGGTGATTGTGGTTGGATGGTGCTGCAGGTGAT
AGACTTGATAGTGACGTTTGCGCATTGTGCAACCTCTTTTTTATTTTTTT
TTTCTCGTCTTTTTTTTGTCAATTTTTTTCCCTATTCTTCACCCCTCTTT
CCCTTTTTTCCTCCTTTTTTCCTGCCCCCTCCTTTTGCTCGTTTTTCACC
ATTTTTCTCCTTATCCTATTCACACTGCTCTTTTTCCTTTTTTTTTTTAT
TTTCTTTTCCCCTCTTGTCTTTTTCTTTTCCACCTTCATTTTTTTCTTTT
CGTTCTTTCTTCCTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_g09.g1 MSMg01no454_g09.g1 CHROMAT_FILE:
MSMg01no454_g09.g1 PHD_FILE: MSMg01no454_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:34 2005
         (317 letters)



>mm_chr10_72584179_72584895
          Length = 717

 Score =  516 bits (267), Expect = e-151
 Identities = 305/321 (95%), Gaps = 8/321 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctaggtggtcaggattgctttaatcagacttgaaatcaaggttttgagattgtattag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gcctaggtggtcaggattgctttaatcagacttgaaattaaggttttgagattgtattag 260

                                                                       
Query: 61  ttaaatgagagttccaacaccagctgggacatggataagtgacatcgtctccacacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ttaaatgagagttccaacaccagctgggacatggataagtgacattgtctccacacaaaa 320

                                                                       
Query: 121 ttttcgaataaccaatagcagatagtccatatccatcagaggggcttattataactaagt 180
           ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccaaacaaccaatagcagatagtccatatccatcagaggggcttattataactaagt 380

                                                                       
Query: 181 cttgtatatttctgtgttgttcga----atgaaagattcactttagcattagaagacttt 236
           ||||||||||||||||  |   ||    ||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtatatttctgtga-g---gaccagatgaaagattcactttagcattagaagacttt 436

                                                                       
Query: 237 gaatatttgttttgatggctggcaatggctataatcatgatggtggttaccatgccaatg 296
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 gaagatttgttttgatggctggcaatggctagaatcatgatggtggttaccatgccaatg 496

                                
Query: 297 atggtgattgtggttggatgg 317
           |||||||||||||||||||||
Sbjct: 497 atggtgattgtggttggatgg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)