BAC Information

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BAC

Clone NameMSMg01-454N17
Chromosome10 (Build37)
Map Location 45,270,662 - 45,271,110
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps
Downstream geneLOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454N17.T7 (MSMg01no454_n17.b1)MSMg01-454N17.TJ (MSMg01no454_n17.g1)
ACCAG541534AG541535
length772785
length of high quality
(start - end)
473 (43 - 515)449 (73 - 521)
definitionCHROMAT_FILE: MSMg01no454_n17.b1 PHD_FILE: MSMg01no454_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:11 2005CHROMAT_FILE: MSMg01no454_n17.g1 PHD_FILE: MSMg01no454_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTTGTACTTGCGAATAAGGCTTGTTTACTAGTTAGGCGCAGTGGA
AGCCAGCGCCATCTTATAATGGCAATTGCTCACAGCACAGCTCTCCACAG
ATGGATCTTGAGGTAGATTCCTTCATGAGGAACCACCATACTGATTACCA
TAATAGCTATACAAGTTAGCACTCCCACCAGCAATATGTGTTTCTTTTAC
CTCACATCCACACCAGTGTGAGCTGTTACTTGTTTTGTTGATCTTAGATA
TTAGGGGTGCAAAATGAAATCTCAAAGTAGTTTTGATTTGCATTTCCCTG
ATGGCTAAGGATGTTGGACATTTTAAGTGTTTCGCATCCATTTGCATATT
TTCTTTAGATGTGTACCCAATTGTTTAATTGGGTTATCTGTTTTCTTGAT
ATCTACTTTCTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTGGANTTTGGNAAAANANTGTGAANNGTTGAATAAAA
ATGTCCTCTTAATATCCTATAATTGGAGGGTTGGGACCCCCGTAGTGACT
TATTCTTGATAGGATATATCGTGGGGCTTTTTGCTCATCATTCAATTTTT
CTGGTACTCTTATGTTGTGTGACTCCGCCGTATGCTCTTTTTGTCTTGTC
GTTTCCTTTTTATGTTGTATCATGACCTACTTTATTATTTCCCAGCATGC
CGTTACCGAATTTGTTTTCCCN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTAGTCATGTTTATGACCATGGGAAA
AGTGCATGTTGTAGGTCTGTGGTCACGGTGTCTCTTCACAGTGATAGAAC
AATGACTAAGACAGACAGTATGAACTTGGACAACCAGTATTTACACAGAA
CCCCAGCACCTGAACTCCCTTCTATTGTGGTTCACTCTGAACACTAAGGG
TATCAGCTATTTTAGTAGCCTGATTTTCACCACAGAAACTAAAAGCAAGC
TCACTGTCCTCATCTCCTTTTCCCCTAAAGCAGAAACATAACCTAGTCTC
ATTCAATCATATGTTCCATCCTCAGAGGAGTATTTGTTTAACCTATGTTC
TCCTCCTTTGAGCTTGGAGTCACAGGAATAGGTCACTGTCTTAAACCTGC
ATGCACCTTGGATTCCCCAACAAAAGAACCTCACAGGACAGATTTCTTCT
CTATGAGATAGTTATCTGTAATAATGTGGCTATACTCTAGAGAAAAAGTA
GTGGGCTCTTGAGACTCATCCACTCAAATGATGGCAGNGATACTGACTTT
TGGGGACCATACTGAAGAACCNGATTTGAGACAATAATAACCCCCCCTAG
CTAGGAAAGGAATGGTTTATTATGAAAGCTTCTTGGCTCCCTTTCGGGAA
ACTTCCCCCAATTAAAAAAGAAACTTTTGTGGCGGCCCCCCTCCAAAAAA
ATTTGTGTTCTGGGGACCTTTCTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_n17.g1 MSMg01no454_n17.g1 CHROMAT_FILE:
MSMg01no454_n17.g1 PHD_FILE: MSMg01no454_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:11 2005
         (449 letters)



>mm_chr10_45270462_45271310
          Length = 849

 Score =  814 bits (421), Expect = 0.0
 Identities = 442/449 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttagtcatgtttatgaccatgggaaaagtgcatgttgtaggtctgtggtcacggtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 agttagtcatgtttatgaccatgggaaaagtgcatgttgtaggtctgtggtcatggtgtc 260

                                                                       
Query: 61  tcttcacagtgatagaacaatgactaagacagacagtatgaacttggacaaccagtattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcacagtgatagaacaatgactaagacagacagtatgaacttggacaaccagtattt 320

                                                                       
Query: 121 acacagaaccccagcacctgaactcccttctattgtggttcactctgaacactaagggta 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acacagaaccccagcacctgaactcccttctattgtggttaactctgaacactaagggta 380

                                                                       
Query: 181 tcagctattttagtagcctgattttcaccacagaaactaaaagcaagctcactgtcctca 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagctattttagtagcctgattttcaccacagaaactaaaagcaagctcactgtcctca 440

                                                                       
Query: 241 tctccttttcccctaaagcagaaacataacctagtctcattcaatcatatgttccatcct 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tctccttttcccctaaagcagaaacataagctagtctcattcaatcatatgttccatcct 500

                                                                       
Query: 301 cagaggagtatttgtttaacctatgttctcctcctttgagcttggagtcacaggaatagg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 cagaggagtatttgtttaacctatgttctcctcctttgagcttggagtcacagggatagg 560

                                                                       
Query: 361 tcactgtcttaaacctgcatgcaccttggattccccaacaaaagaacctcacaggacaga 420
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 tcattgtcttaaacctgcatgcaccttggattccccaacaaaagaacctcacaggagaga 620

                                        
Query: 421 tttcttctctatgagatagttatctgtaa 449
           |||||||||||||||||||||||||||||
Sbjct: 621 tttcttctctatgagatagttatctgtaa 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)