BAC Information

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BAC

Clone NameMSMg01-454P07
Chromosome10 (Build37)
Map Location 78,338,000 - 78,338,467
singlet/doubletsinglet
Overlap genenone
Upstream geneC330046G03Rik, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356
Downstream geneGA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454P07.T7 (MSMg01no454_p07.b1)MSMg01-454P07.TJ (MSMg01no454_p07.g1)
ACCAG541609AG541610
length750730
length of high quality
(start - end)
234 (85 - 318)468 (80 - 547)
definitionCHROMAT_FILE: MSMg01no454_p07.b1 PHD_FILE: MSMg01no454_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:19 2005CHROMAT_FILE: MSMg01no454_p07.g1 PHD_FILE: MSMg01no454_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGGATCGAGAGC
CGCGGAATTCCTCCTTTCCAAAAAGGGCATTGGNTATTCAAGAGACTCCC
AAAAGATTGTAGGCTGTTGTCATGCTTCTGTTTTTTTTTTTCCCTCCAGA
GGTGGAAGATATGTCTCTACTGCTGAGGACACCGTGCATTTTGGACACAG
GGCACAGTCTCTTTAGCTAGAATTGACTTGAAAGACTCTTTCTTGAGGAC
TATTTTTTCATGGTCCCAGTAGGTGCCACTCAAGGTTCCAAAGGAGGGAA
GCAACCAATAATCCTATCCATCNATGATTCCTATGAGTCACAATAGTGAT
CAGCTGAGCACAATAACCCTAAGGGTGCACTAATGTCATGATACCTATTT
GGTATCCAACAGTTCTCATATTGGACATAAGATCCTTTCACCAAGAGGTG
TGCCAGGAACTGAAAACCTAGTCAGCTACTCAGGGTTGTTAAAACCTTGG
ACATTGCCTTATTAAATCAGCATTATCTCCAACTGCATCTGAATATTTGT
CTTTATACCCACCGGTACATCTTGAAGTTCCCATCCCTCACCGAGGAAAC
ATCTTCTCCCTTCTTTCTTTTTTTCTACCTAGGGAGCCCTTTTTTTTATT
ACCCCCACCCCATTTATATAGTTGGAGGTGTTCATACCTTAATTCTCCTC
TTAAAAAATAAACCGGCGTGCGTTATTAACTTGCCATCGCCATATCTTCN

NTCTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAATGGCAGCTCAAGCTT
CTCAGAAAATGGTGGAGACTGAAACTATGAACCAGTCCACACAGCACAAA
GAACCGAAAACACTTAAGAAACAAGAAGTGTGAACAACCTCTCCAGCTTC
TGTCCAAGGCTGCATACTCTGAAGGTCAGGAGAAGATAAGGTTGAAGTGT
CCTACACTTGCTCATTCGCACACTTCCCTAATATTACATCATTATCCTTT
AAGTAGCTGATTACCCTCTGGTACACAGGTCTGGAAAGCCAAGAATTTAA
TTTTGCTGATTCCCAGGGACCAATGACTTTTGGTTGTCTCTTCTACATGA
ACTTAACTATACTCTAAAGGTTTTGTCTCCTGGCACCATTATTCAATGAC
ATTTTCCTAAAGCCTAATACGAATGGCCTCTCTTAAGTCAATCATGTAAA
TTGTTAAAATATTAGTCAGTGGATCTCACAAAAATCCCTGAAACGTCATA
AAACTGCTCACATCTGCTCTCAAAAATATTATTGGTGATGTTTTTCTTGA
AAATATATTAATACAGCGTATGCGACTTCCTGGGCCAGATGACCGGATTA
AACCCCGTATATCTGCACCTAAACATGGCTTTTGCAAACCATTCGTTTTC
CATAATCTCCACCCGGTATTTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_p07.g1 MSMg01no454_p07.g1 CHROMAT_FILE:
MSMg01no454_p07.g1 PHD_FILE: MSMg01no454_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:19 2005
         (468 letters)



>mm_chr10_78337800_78338667
          Length = 868

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaatggcagctcaagcttctcagaaaatggtggagactgaaactatgaaccagtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 actgaatggcagctcaagcttctcagaaaatggtggagactgaaactatgaaccagtcca 609

                                                                       
Query: 61  cacagcacaaagaaccgaaaacacttaagaaacaagaagtgtgaacaacctctccagctt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tacagcacaaagaaccgaaaacacttaagaaacaagaagtgtgaacaacctctccagctt 549

                                                                       
Query: 121 ctgtccaaggctgcatactctgaaggtcaggagaagataaggttgaagtgtcctacactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctgtccaaggctgcatactctgaaggtcaggagaagataaggttgaagtgtcctacactt 489

                                                                       
Query: 181 gctcattcgcacacttccctaatattacatcattatcctttaagtagctgattaccctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 488 gctcattcgcacacttccctaatattacatcattatcctttaagtagatgattaccctct 429

                                                                       
Query: 241 ggtacacaggtctggaaagccaagaatttaattttgctgattcccagggaccaatgactt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gggacacaggtctggaaagccaagaatttaattttgctgattcccagggaccaatgactt 369

                                                                       
Query: 301 ttggttgtctcttctacatgaacttaactatactctaaaggttttgtctcctggcaccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttggttgtctcttctacatgaacttaactatactctaaaggttttgtctcctggcaccat 309

                                                                       
Query: 361 tattcaatgacattttcctaaagcctaatacgaatggcctctcttaagtcaatcatgtaa 420
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 308 tattcaatgacattttcctaaagcctaatacaaatggcctctcttaagtcaatcatgtga 249

                                                           
Query: 421 attgttaaaatattagtcagtggatctcacaaaaatccctgaaacgtc 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 attgttaaaatattagtcagtggatctcacaaaaatccctgaaacgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)