BAC Information

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BAC

Clone NameMSMg01-454P16
Chromosome10 (Build37)
Map Location 110,386,048 - 110,386,426
singlet/doubletsinglet
Overlap geneZdhhc17
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2
Downstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454P16.T7 (MSMg01no454_p16.b1)MSMg01-454P16.TJ (MSMg01no454_p16.g1)
ACCAG541627AG541628
length1,069772
length of high quality
(start - end)		---394 (73 - 466)
definitionCHROMAT_FILE: MSMg01no454_p16.b1 PHD_FILE: MSMg01no454_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:21 2005CHROMAT_FILE: MSMg01no454_p16.g1 PHD_FILE: MSMg01no454_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGAAGGGACACAGGTGAGCGGTAAGGTGTGTGGGTGCGGCCTTCTCTCC
CTCAGAGACGTCGCGCTGCATCGGCGCGGGATCACCTCACTAAGAAGATA
ACACGAGAGATAGCATGCGGTGACGCACGTTGCTTGCGCTCGACACGCGC
CCTTCACGCGCGCTTGTATGGGTGAGCTGTGCTGATCGGTTGTCAGCCGC
CCTCTGCCGCCCGGCTGNTCCTAGCGCGGTGGAGAGACAGTGAGCGAGAA
TATTAGTTGTGTGGGTGCCGCGCGGTGGGTGAGGCCGAGCAACAGCACGT
ACCGCCCCTGTATCTGGATAGATACTGCCGCCACTCATCACCTATCGACG
TCACGCAGCGCAAACGCAGTACCCATATAGTCACGTCCCTATAACTCCAC
TTCCGCTCTCATGCGCCGACCTCCAGAGCGTTAGCGATACAGTGCGTCGC
TCTCGCGCGCGCGCCACCAGTCCTCCTATATATNTCCACCCTCTTGATAG
TGACTACAAAAGCGACAGCACCACCAACGCACCGACCTCCCGCTTAACCG
CACAAAAAGAAACTGAGCGCAGGTAGCTCTTCAATCACCCCCGCACGCTC
CTCGCGCGCTATGCTACACACGAGTATTGAACGTGCGCCTGCCACGAGGG
CTTCACGTACACGCTTTCGCAAGATAACTGAGTGTCCGCACTGCTCTGCT
ACTATCTATTAACGATGTAATATCACAACATTTTCGTCAACGCCGTTCTC
ACCTCTTATCTTGAGTTATCTCGCCGAGACCTAATCGCACAGTTAGATCC
ATACGGGCGTGCAGGCGCGCGATTGCACCGACATACCACGCACGATGTTG
CGTATATGCGGATCAAGAAATGACGTGCGCCCCCGACAGATCATACCCCG
CACCTCAACCAGCCCATTTTGTTTCTTGTTGTTCCGACACAGGCATCCGA
CACACGACATATAAATCAGCCGGTGCGAAGGTAGGTGTGATTTTCAATCA
CATCACACACCGCAGTCGTGAGCAAAAATTGTCGCGCGTCGCGCGTGTGT
ACACCACCTCAGATTTCCC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTTTCTGACAGAAAATGAAAAGGACA
GGCACAAACATATTCCAATCATAAATGGAAAACAGAGCTGTCTGTCTAAA
CCTTCCCACAATCCTAAGTTATGTGAATTATTTTATTTACTTACTATTAT
GTACTAATAACAAGACATTAGTTTACCTGCAGTATATAATTTAAATGCCT
TTAATTTGATGTATGATTTGGAGAATTTTTACATTGATTGAAAAGAACCG
CTTTTCAGTTTAGTGATGACATAGTACTCCAAGTTGCACCGACACTTCCA
GACAAATACTCAAAGTGTATTTAAAACTATCTGTCTGAAGAATAATCTAT
GGAATTTTCATACCATGATTTTTAAACTCAAGAAAAAATTTAAACCATAG
CTAAACCGTTTGCTGTTAAGTAGTTGTCGGTTTTCACTGAGTCACATTTT
GAAAGGGTAAGGAGGATGAGAACGGTGTGAGTGGGACTCTGATGTGCTGT
CAGCGTCTGCTACTGGGAACAGCACAGCCCAAATGAAAAATCCCTCCTGT
CTCGTCTACCACAGATACAGGAGGGAGGGGGGGTCTACCCAAACTCCCTC
CGCCTATGAGGGGGGCGGTGGGNAAGGGAAAAATTAAAAAAAAATGGGTT
TTTTCCTCCGGTCTGGGGAAAAATTGAGGGCGAAATTTCTCTCTGCCGGT
TAAAAAGTCGGGGGATTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_p16.g1 MSMg01no454_p16.g1 CHROMAT_FILE:
MSMg01no454_p16.g1 PHD_FILE: MSMg01no454_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:21 2005
         (394 letters)



>mm_chr10_110385848_110386642
          Length = 795

 Score =  659 bits (341), Expect = 0.0
 Identities = 374/393 (95%), Gaps = 14/393 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttttctgacagaaaatgaaaaggacaggcacaaacatattccaatcataaatggaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttttctgacagaaaatgaaaaggacaggcacaaacatattccaatcataaatggaaaa 260

                                                                       
Query: 61  cagagctgtctgtctaaaccttcccacaatcctaagttatgtgaattattttatttactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 cagagctgtctgtctaaaccttcccacaatcctaagttatgtgaattattttatttattt 320

                                                                       
Query: 121 actattatgtactaataacaagacattagtttacctgcagtatataatttaaatgccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actattatgtactaataacaagacattagtttacctgcagtatataatttaaatgccttt 380

                                                                       
Query: 181 aatttgatgtatgatttggagaatttttacattgattgaaaagaaccgcttttcagttta 240
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 381 aatttgatgtatgatttggagaatttttacattgattgaaaagaaccaattttcagttta 440

                                                                       
Query: 241 gtgatgacatagtactccaagttgcaccgacacttccagacaaatactcaaagtgtattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gtgatgacatagtactccaagttgcaccgacacttccagacaaatacgcaaagtgtattt 500

                                                                       
Query: 301 aaaactatctgtctgaagaataatctatggaattttcataccatgatttttaaactcaag 360
           ||||||||||||||||||||||||||||||||    |          |||||||||||||
Sbjct: 501 aaaactatctgtctgaagaataatctatggaa----c----------ttttaaactcaag 546

                                            
Query: 361 aaaaaatttaaaccatagctaaaccgtttgctg 393
           ||||||||||||||||||| |||||||||||||
Sbjct: 547 aaaaaatttaaaccatagccaaaccgtttgctg 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space:   302610
Effective search space used:   302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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