BAC Information

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BAC

Clone NameMSMg01-456E06
Chromosome10 (Build37)
Map Location 10,134,305 - 10,134,548
singlet/doubletsinglet
Overlap gene9130014G24Rik
Upstream geneE130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238, LOC665110
Downstream geneRab32, EG382450, Grm1, Shprh, Fbxo30, Epm2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456E06.T7 (MSMg01no456_e06.b1)MSMg01-456E06.TJ (MSMg01no456_e06.g1)
ACCAG542609AG542610
length768793
length of high quality
(start - end)
245 (70 - 314)226 (77 - 302)
definitionCHROMAT_FILE: MSMg01no456_e06.b1 PHD_FILE: MSMg01no456_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:02 2005CHROMAT_FILE: MSMg01no456_e06.g1 PHD_FILE: MSMg01no456_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATAATTTGCGGGCGCTAAACGACTCACAATCAAAAGAGGAGCCGCG
GAATTCTGCATTCCTGAGACATTTCTTTGGNTCTGAGGGTGGAAAGCAAT
TGCTTTCCTTTCATAATGATAAAATCTACCTATCTAGCATATTTAGACCA
ATGTAATACATTGAGGACTTGTTCAGTCCTGGCCCTGTATGGGGACTTTA
GACCCCCTAGCACCTTACCACTGGGGTTCTACATGCTCTACAGTTGATAC
ATTAAAGTAGTGATATTCTAAAAGTAGTGTAGGGATACACTGTACACTGG
TTGTACACTGGTATTTTTTGCACATTATATCCATTTGTGAGAGTTGAACA
TTAAAACTTAAATGAGGATTAGCTTGAGAAGTAAATATTCCAGTAGGGTC
ACGTGGCCATATGACTCACTCTCATCCTTGAAGTTAGCATGGGAGCCTGA
TGCCATCATCCCAGAATCCACTACTACTAGCAAAAGTCTGCCACACAACA
GCCATAACATTATAAAAATGATAGGACACATGCAGTAGTGTACACCATAG
GGGACAAAGGCAGCTTAAGCTACTTTTTTATTCCAAGTTAAAGAAGCAAC
GGCTATGGGTTTGATACCCTAATCTTAAAATTTTTTCTTGCGGTTCTGGG
AAATTCTCGAACCTCCCCTATCATTTAAGACCCGTTTCCCTCATTTCTTT
TTCTCTTAGTCTCAGCCTCTTTTGGTTTGTCCTTAATAGTTCTTTTTCTC
TTTCCACTCCTCTATTTT
CCTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTATAGATCTGAACCCAATTT
TTAATTGAGTTATTTATTTTTTTCTATTTTGAGTTCTTTGTATATTTTGA
ATATTAGCCCTTTATTGGATGTGCAATTGGTAAACAATTTTCCCCATCCT
GTAGGCTGCCATTTTGACTGATAATATCCTTTGCCAGGCATGCAGAAGCC
TTTCTTTTTTATGAGCTCCCATTTATTTGTTGATCTAGTGCCGGTACTAA
TGGCGTTCTGCTAAGATTTTATCCTCTTATGCCAATGATCCGAACTGATG
CCAGTATCGTTATCTACCATCTGGTATGAGTGCATGTCTACTCTTTGTTA
CGTATTCTACGTTCTTCCCCCCCTCGCTTCGCCTTTATCCTGTTTACTCC
ACCTTCCGTTATCTTTCCTTCCGCCTTTCCTTCTTATTGTCCCTACCATT
TGTCTTTCCACTCTTCCTCCTTTCCTCCCCTCTTTTCCTTCTACTTTCCT
TTCCTTACTCTTTCTTTTTTCTTCTTTTTCCCCCCCTTACATCCCTTCTT
CCTCTCTTTTGGTCTCTCTTTTCCCCCCCTCTTTCTTTCTTTTCCCCCCT
TCTTTTCTCCCTCTTTTTTTTCCTTCCTATCACCTTTTTTCCCACCTCTT
CCTTTTTCCCCCTCTTTCTTTTCCCCTTTACCCTTTTCTCTCCCTCTCGT
TTTCCTCTCCCCCTTCCTTTTCATCTCCTTTTTTCTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_e06.b1 MSMg01no456_e06.b1 CHROMAT_FILE:
MSMg01no456_e06.b1 PHD_FILE: MSMg01no456_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:02 2005
         (245 letters)



>mm_chr10_10134105_10134749
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttctttggntctgagggtggaaagcaattgctttcctttcataatgataaaatctac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catttctttggttctgagggtggaaagcaattgctttcctttcataatgataaaatctac 385

                                                                       
Query: 61  ctatctagcatatttagaccaatgtaatacattgaggacttgttcagtcctggccctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 ctatctagcatatttagaccaatgtaatacattgaggacttgttcagtcctggccctgtg 325

                                                                       
Query: 121 tggggactttagaccccctagcaccttaccactggggttctacatgctctacagttgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggggactttagaccccctagcaccttaccactggggttctacatgctctacagttgata 265

                                                                       
Query: 181 cattaaagtagtgatattctaaaagtagtgtagggatacactgtacactggttgtacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattaaagtagtgatattctaaaagtagtgtagggatacactgtacactggttgtacact 205

               
Query: 241 ggta 244
           ||||
Sbjct: 204 ggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)