BAC Information

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BAC

Clone NameMSMg01-456E24
Chromosome10 (Build37)
Map Location 5,817,786 - 5,817,955
singlet/doubletsinglet
Overlap geneGm221
Upstream geneSyne1, Esr1, LOC100041310
Downstream gene1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456E24.T7 (MSMg01no456_e24.b1)MSMg01-456E24.TJ (MSMg01no456_e24.g1)
ACCAG542645AG542646
length773811
length of high quality
(start - end)
362 (49 - 410)170 (82 - 251)
definitionCHROMAT_FILE: MSMg01no456_e24.b1 PHD_FILE: MSMg01no456_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:05 2005CHROMAT_FILE: MSMg01no456_e24.g1 PHD_FILE: MSMg01no456_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCATTGTCGAAAGCACCCCCACCTCCACAGGTGGGGGCAAGC
CAGTAGGTACTTCAAATCATGGGTTGAAGGTGCCAGGCGTGGTGTCACAC
GCCTTTAATCCCAGCACTCGGGAGACAGAGGCAGGCGGATTTCTGAGTTC
GAAGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATATA
GAGAAACCCTGTCTCAAAAACAAACAAACAAAACCAAAACAAAAATCATG
GGTTGAAAAGGCTCAGCTCCTGAGGGTGTGTTGCAATAAAGAGTTTTGTA
GGGTTTTCTTGGTCCCTGTTCAGTTATTGTGAAGAGACACCATGACCAAG
GCAGGCAACTCTCACAAGGGAAAGCATTTCATTGTGGGCTTGCTTACAGC
TTCAGGTCTAGTCCATTATCATTAAGGCAGGCATCTGTGGTACTAGAGGA
GTTGAAAGCTTCTTCCTTGATCTTGCTGCACTGAATAGCCCGAACCCTGG
CTGAAATTTTTATAATCTTCCTAGCCCCCCCCCGCGGGTTGGATTTTATT
CCGTCTAGGTTTTACCTCTTCCGCCCCTATTTTTTCCCAAGAAAGGGCCT
CTTCCCTTGGCGAACAAACGTTTTTCATTTTATGGTCCTCTTTTTCGTTC
TCTTTTTTTTTTTTCTCCCTCTCCATTTTATTTGTCCTTATGGTAAAATT
TTTGTTGCATCCCCTTGTTTTTN
NNNNNCCGATGCTATNGNNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCCCACACCTGTTCT
CTTTACAGGAAGTTTTCATTTCATGGCTGTAGTTTTCAACACTTGAAATT
TGGGTTTGTGCTTTCCGCACTGCTAGCTAATTTTTCTACTAATTTATATT
TTTTCTATTTATAGAGGCATTTTCTATTTATAGAGGTCAGGAGTTAGCTC
ANAGTCAATAAAAAGTCATGACCCTACACCCACAGCCCGGTAGATAGCAT
CCTAGGGTGCATGCCTAAAAAGATTGTTATACTTTTTTGGGTTTGTGTTT
TAGGGGNATTTNNNNNTNTTNNNNNATGGGTTTATCTGCAATTTAGGTGG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAATAAGAGGGGGGGGGG
GGTGGGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGT
GCAAGTGAGGGGGGAGAGGGAGGGGGGGGGGGNNCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCNNNNNNNNNNNNNNCNNNNCNCCCNCNCCCNCNCCCCCCCCNNCCCC
CCCCCCCCCCNCCCCCCCCNNCCCCNNNNNNNNNCCCCCCNNCCCCCNNN
NNNNCCCCCCCCCCCCNNNCCCCCCCCNCCNNNNNNNCCCCNCNNCCCCC
CNNCNCNCCCCCCCCTTTCCCCTCCCCCCTTCCCNCNCCCCCATCTATTT
TTCTGCGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_e24.g1 MSMg01no456_e24.g1 CHROMAT_FILE:
MSMg01no456_e24.g1 PHD_FILE: MSMg01no456_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:05 2005
         (170 letters)



>mm_chr10_5817586_5818155
          Length = 570

 Score =  321 bits (166), Expect = 1e-92
 Identities = 169/170 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcccacacctgttctctttacaggaagttttcatttcatggctgtagttttcaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttttcccacacctgttctctttacaggaagttttcatttcatggctgtggttttcaaca 260

                                                                       
Query: 61  cttgaaatttgggtttgtgctttccgcactgctagctaatttttctactaatttatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaaatttgggtttgtgctttccgcactgctagctaatttttctactaatttatattt 320

                                                             
Query: 121 tttctatttatagaggcattttctatttatagaggtcaggagttagctca 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctatttatagaggcattttctatttatagaggtcaggagttagctca 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)