BAC Information

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BAC

Clone NameMSMg01-456F19
Chromosome10 (Build37)
Map Location 49,295,530 - 49,295,779
singlet/doubletsinglet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream geneLOC629652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456F19.T7 (MSMg01no456_f19.b1)MSMg01-456F19.TJ (MSMg01no456_f19.g1)
ACCAG542683AG542684
length735747
length of high quality
(start - end)
440 (69 - 508)253 (329 - 581)
definitionCHROMAT_FILE: MSMg01no456_f19.b1 PHD_FILE: MSMg01no456_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:09 2005CHROMAT_FILE: MSMg01no456_f19.g1 PHD_FILE: MSMg01no456_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTATGACTGTTATCTATTCAGCAGCATTCAAATTTACTTC
TAGTAGTGATGGTGAAACTAATTAGGCATTACAAAGAATGGAGCTGGAAT
AGCTCAGGCTGGTCTGCACAGTGTTTACTTGGGACAATAGCCAGTCTTAC
CCAGACAAGGGAATTCACAATGGCCTAGTGAATAGGTGGGTTTACCATGA
AAGAGTTAGGGAACCACCCTGAGACAGGTTTCTTCAGTAGGCCTAAAGAA
ACAGCATAATCAGGCATTTACTAAGAACCCCTGGTGGTGGGCTTAACAAT
AGACTAGCATTATACCTGGCTCCCTTCTTAGTGGCAGCTGCCTGATCCCT
GACTTCTTTTGATGTATATATTCCTTTTGTATTGTGTCACTGTAAGTCAG
CGGATGTATCTTGCCTGGTTTCTTGTAGCTCTTCTGTATAAAAAGTATGA
TGCTCAACTTTGAAAATTATATTCATATTCTCCCCAATCTCTCCTGTTGA
TTCTGTTTGCCATTCATTCTCCCAACCCCTTGTCCACCCTGCTACCAAAG
AACTTGTTCTACACAGACAGGGTACCAAAAGTGGTCTGCGGGAGGCCCAG
GAACCTGGGAAGAAATTAAACTTTCTCTCTTCTCCTTTAAGGAAAAATTA
TTTGTTAATTTCCGGGAATATATAATTGGCTAACC
TCCCAATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGATTTTTGAGAATATAAATTAGTT
TTACATTTCAGATTCATGCCATGGTGATAAAGGGTTTACAAGACTGGAGG
GAAAAGGTTCGACTTGACTGTAAAAAGTTCTGTTTGTCACAACAAATGCA
AAGTAAGTCATTAAATTCAAGGCAAGTGAATATGATTAGTAGTATCACTC
AAGATATTTCCATTAAGGAAGAAGAAATTCTGATGCTAATGAAAAAATTC
ATATTGAAACATAAGAAGTTTGTAATATATAGATAAAATATTAAAATATT
AATAGACTTCTTAATGGTGACTTCAAAGGTTCAGCGTAGAAATATAGATT
CAAATTTTCCTGACAACAAACAGAATACTATTAACTGATATCCTAGCACA
ATCCTTAGGCAATAAATTCACCTGATTTATAAGACATTTTCTCAATTAAG
CATCTGTTAAAGCCTATTAGGAATCTAACCTAGAGGTAGGAAAACTCAGA
TTAGCGACTTTCTTCGCAACATGTAAAAAGGGGTGAAGCTATCATTTCTA
TCTTGTTTATTGAGCTATTATTGCTTAAGTCATGAATTAAAGCAACGAAT
AGATATTCTATGGATAATTTGAAACTTTATAGCACCTCTTCCAATGTTCA
TAATAGTTCTGCAACTCAATATTATCTTTCCTATACATTTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_f19.g1 MSMg01no456_f19.g1 CHROMAT_FILE:
MSMg01no456_f19.g1 PHD_FILE: MSMg01no456_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:09 2005
         (253 letters)



>mm_chr10_49295304_49295956
          Length = 653

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagataaaatattaaaatattaatagacttcttaatggtgacttcaaaggttcagcgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atagataaaatattaaaatattaatagacttcttaatggtgacttcaaaggttcagcgta 417

                                                                       
Query: 61  gaaatatagattcaaattttcctgacaacaaacagaatactattaactgatatcctagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaaatatagattcaaattttcctgacaacaaacagaatactattaactgatatcctagca 357

                                                                       
Query: 121 caatccttaggcaataaattcacctgatttataagacattttctcaattaagcatctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 caatccttaggcaataaattcacctgatttataagacattttctcaattaagcatctgtt 297

                                                                       
Query: 181 aaagcctattaggaatctaacctagaggtaggaaaactcagattagcgactttcttcgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaagcctattaggaatctaacctagaggtaggaaaactcagattagcgactttcttcgca 237

                     
Query: 241 acatgtaaaa 250
           ||||||||||
Sbjct: 236 acatgtaaaa 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)