BAC Information

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BAC

Clone NameMSMg01-456H21
Chromosome10 (Build37)
Map Location 91,868,750 - 92,051,589
singlet/doubletdoublet
Overlap geneLOC216229, LOC100041814
Upstream geneLOC100041799, LOC667203
Downstream geneNedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456H21.T7 (MSMg01no456_h21.b1)MSMg01-456H21.TJ (MSMg01no456_h21.g1)
ACCAG542782AG542783
length750768
length of high quality
(start - end)		453 (71 - 523)244 (83 - 326)
definitionCHROMAT_FILE: MSMg01no456_h21.b1 PHD_FILE: MSMg01no456_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:20 2005CHROMAT_FILE: MSMg01no456_h21.g1 PHD_FILE: MSMg01no456_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,868,750 - 91,869,202)(92,051,346 - 92,051,589)
sequence
TTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATATTTCCTCAGCAATCCCCACAAAGAAAAATTGAGTTCCT
GAGTGTCATGAGTGTTTCTTATTCAGTGAGGCACTCGGTGAATTGTGCTG
TATACACAGGAGGAATTTTATCCATATTTTCTTATTTATATATCGATTCA
TATAGTTTTAGCGCTGGGTTTGAGTTTAGGGCTTTGGGCATGCGAGGCAA
ACACTTCTGAGTTACATCCTCCTTGTCCATGCTACGGGTTATACCCGCAA
CCCTTCATTCACATCTTTTTGAGGACATAAAGAAAGGTAGCTGACTAACA
GCCCAGTTTGCCCGCGGCGTATCTGCATATTGTTCTATGCTAGGTTGCTG
TACTGAAGATCCTTAGTACTTAATCCTACCACATCTCTGAGCCGTTCCTG
ATCCCCACCTACAGCGTAGCAAGTACGCCATGTGCTCCCCTGTGTTTCCC
TGGGGCATATGTTCCCCTCGCCTGTCCTCCCTGTGGACAGAGTAACCCCA
TGCCTCCCCCTTTGGGAGATCTTTTCCTGCTCCCCCATGTTCAATTTTTG
AGAATACTCATAACAGAAATGGGTTATGGGAAACATTTTTTTCCATAAGC
TCAGGTTACCTGGCCCTGGAATGAGCTACAGGCCGCTTTAAGTTTAGGGG
TAATAACCATGGGGGAACTTTTTTAAAAATTGGTTGAAAGAATCTCCTAN


NTATTTTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGCCTCAGTTTGTACA
TCTGCAAAACCTTCCATTAAAAACAGAATGTCCTGTCTAAAAGACAGCCT
TCTATGGCTTCTGCGGTTTCCTTTGTTTGGATGTTAAGACCTAAGCCAGG
TACAGAGCCATTTACACATTATCCTCTTCCCACCTCTCCATGGTCTGTTT
TGCCTCCTAGGTGCCATTTGAAAATCCCTACAGATATTTTTTCTTTTTAT
TATCTCTATGGAATGTGTGTGAATGTTTTTATCTGGACGATGCTACCTGC
ACTTAATTAATAGAGGATGGCGATGCTTCTGCCCCACCCCAACCCCAGTA
ACACACAGGACAGCTCCACAACAAAGAACTGTGTAGTCCAAAATTTCAAT
GGAGCTGAAGTTTGGAAACCTTGCTATGGTGGTTGGTTCGTCTACTTGAT
CCAATCTAGAATCATCCATATAATAGAGTCTCAATGAGGGTATGTCTTAA
ACTTGGTTGGTCAATGGGAATTGGCTGCTCAGGTCCCCCTTAAATTATTG
GGCGTTGGAAAAACCCTTCCCCCTGGGTTTCTCTTCCCCTTTATTACTAT
TTAACCGTTTTTTTTTTTTTTTTTATTATCCTTCCCTTGATTTACTCCCC
CTCCCTCCTTCTATCTTTATCCTTCTTCCTCCCTCCTGTCTTTTCCCCCC
TTCTCAATTTTTCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_h21.b1 MSMg01no456_h21.b1 CHROMAT_FILE:
MSMg01no456_h21.b1 PHD_FILE: MSMg01no456_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:20 2005
         (453 letters)



>mm_chr10_91868550_91869402
          Length = 853

 Score =  861 bits (445), Expect = 0.0
 Identities = 451/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaatccccacaaagaaaaattgagttcctgagtgtcatgagtgtttcttattcagtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaatccccacaaagaaaaattgagttcctgagtgtcatgagtgtttcttattcagtgag 260

                                                                       
Query: 61  gcactcggtgaattgtgctgtatacacaggaggaattttatccatattttcttatttata 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcactcggcgaattgtgctgtatacacaggaggaattttatccatattttcttatttata 320

                                                                       
Query: 121 tatcgattcatatagttttagcgctgggtttgagtttagggctttgggcatgcgaggcaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcgattcatatagttttagcgccgggtttgagtttagggctttgggcatgcgaggcaa 380

                                                                       
Query: 181 acacttctgagttacatcctccttgtccatgctacgggttatacccgcaacccttcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacttctgagttacatcctccttgtccatgctacgggttatacccgcaacccttcattc 440

                                                                       
Query: 241 acatctttttgaggacataaagaaaggtagctgactaacagcccagtttgcccgcggcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatctttttgaggacataaagaaaggtagctgactaacagcccagtttgcccgcggcgt 500

                                                                       
Query: 301 atctgcatattgttctatgctaggttgctgtactgaagatccttagtacttaatcctacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctgcatattgttctatgctaggttgctgtactgaagatccttagtacttaatcctacc 560

                                                                       
Query: 361 acatctctgagccgttcctgatccccacctacagcgtagcaagtacgccatgtgctcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatctctgagccgttcctgatccccacctacagcgtagcaagtacgccatgtgctcccc 620

                                            
Query: 421 tgtgtttccctggggcatatgttcccctcgcct 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtttccctggggcatatgttcccctcgcct 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no456_h21.g1 MSMg01no456_h21.g1 CHROMAT_FILE:
MSMg01no456_h21.g1 PHD_FILE: MSMg01no456_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:20 2005
         (244 letters)



>mm_chr10_92051146_92051789
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcgcctcagtttgtacatctgcaaaaccttccattaaaaacagaatgtcctgtctaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcgcctcagtttgtacatctgcaaaaccttccattaaaaacagaatgtcctgtctaaaa 385

                                                                       
Query: 61  gacagccttctatggcttctgcggtttcctttgtttggatgttaagacctaagccaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacagccttctatggcttctgcggtttcctttgtttggatgttaagacctaagccaggta 325

                                                                       
Query: 121 cagagccatttacacattatcctcttcccacctctccatggtctgttttgcctcctaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 cagagccatttacacattatcctcttcccacctctccatggtctgttttgcctcctaggg 265

                                                                       
Query: 181 gccatttgaaaatccctacagatattttttctttttattatctctatggaatgtgtgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccatttgaaaatccctacagatattttttctttttattatctctatggaatgtgtgtga 205

               
Query: 241 atgt 244
           ||||
Sbjct: 204 atgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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