BAC Information

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BAC

Clone NameMSMg01-456O21
Chromosome10 (Build37)
Map Location 27,247,844 - 27,248,252
singlet/doubletsinglet
Overlap geneLama2
Upstream geneLOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456O21.T7 (MSMg01no456_o21.b1)MSMg01-456O21.TJ (MSMg01no456_o21.g1)
ACCAG543116AG543117
length769788
length of high quality
(start - end)
412 (45 - 456)392 (84 - 475)
definitionCHROMAT_FILE: MSMg01no456_o21.b1 PHD_FILE: MSMg01no456_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:55 2005CHROMAT_FILE: MSMg01no456_o21.g1 PHD_FILE: MSMg01no456_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATTTTCTTTCAAAACTTGATTTTCCTTCAACCACATCAGAAATC
TGTGTGTTCCATCTAATCCCTTCTTCTATCATATATTCTATATGTAACCA
ATTACTAAGTCTTATAGAGTCAAAATGCTACAACAATTGGTTGGTTTATT
TCCAGTCTATCCCCCCAGTAAGCATCCTATTTCGAGCATTGAAAATTCCT
TCAATTACTTAAACAGATTCTTTTTTTTATTTAAAATTTAATATTTTAAT
TTATGTTTCTGCCACAGGGCCCAGAGGCACCTGAACTGAGCCTGACCTGA
AACCTTCCTCACTGAGGACTAGCTTTCATGATGACATAAGGTGTTATGAA
AGCCTCCAAAGGAAAGGGGCAAGCAATAGACCTTGCCTAGCTAGGTTGTC
CATGAACCACAACCTCCTACAACATGCCTTGATAACCTTGACAGGTATTG
GAGTGTCACATATACTTTGGTGGGTGGTGACTTATTACTCTCTATTTGGT
ATTCCCTTTCTCCCCTTAATTTTATATGCTTCCCCTTGTCTTTGTACCCC
CCCCTCTCATTTTTCTTTCTATTTAACCCCCTCACTTTTTTATGCTTTTC
TTTTCTTGCTATCTTTTCTTATTCTTTTTCCATTTTTGTTTCTCCTGCCC
CTTTTCCTCTCTCTTTACTTTTTCCTTTTTTTTTTTTTTGTTTTCCCCTT
CTTTATTTTCCTCTTCTTT
NAAACCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAGAGGAATATTG
AATGGCCAAGACGCACCTAAAGAAATGTAAACATCCTTAGTCGTCAGTGA
ACTGCAAATCATCATGACCCTGATATCTCACCTTACTTCAATCAGAATGG
CTAAGATTTAAAAAAAACAACAACTCAGATGACTGCATATGCTAGTGAAG
ATGTGGAGAAAGAGGAACAATTCTTCATTGCTGGTGGGATTGCAACAGGT
ACAACCAGTTTGGAAATCAATCTGGTGGTTTCTCAGAAAATTAGAAATAG
TTCTACCTGAAGAGCAAGCTATACCGCTACTGGGCATATACCCAAAAGAT
GCTTGAATGTATAACAAAGACACAGGCTCCACTATCATCATGGCAGCCTT
TTTGATAAGAGCCTGAAGCTGGAAACAATGTTACGAGATGTCTCTCAATG
GAAAAATGGATACAGAAAATGGGGTACATTTTAACCAAGGAATACTACTC
AGCTATTAAAAAAAAGACTTCTTGAGTTTTGTAGGCAAATGGTTGGAACA
AAAAAATAATTTCCTGGGTTGTGGGAAACCTAAATACCCAAGGGTCCCCT
TGGGGGGGTATCCCCTGTGGAATATAACCTCATCGCCACAGTCTTTAATC
CCCTCACTCAAACTCTTCTTTTTGAGTTTTTCCCACAACCCTTACACAAC
GGTTTTCCGGTCCCTTTTCTTCCTTCTATTCTGAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_o21.b1 MSMg01no456_o21.b1 CHROMAT_FILE:
MSMg01no456_o21.b1 PHD_FILE: MSMg01no456_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:55 2005
         (412 letters)



>mm_chr10_27247641_27248452
          Length = 812

 Score =  737 bits (381), Expect = 0.0
 Identities = 402/409 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcattttctttcaaaacttgattttccttcaaccacatcagaaatctgtgtgt 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattctcatttcctttcaaaacttgattttccttcaaccacatcagaaatctgtgagt 263

                                                                       
Query: 64  tccatctaatcccttcttctatcatatattctatatgtaaccaattactaagtcttatag 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 tccatctaatcccttcttctatcatatattctatatgtaaccaattactaagtcttgtag 323

                                                                       
Query: 124 agtcaaaatgctacaacaattggttggtttatttccagtctatccccccagtaagcatcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 agtcaaaatgctacaacaattggttggtttatttccagtctatcccctcagtaagcatcc 383

                                                                       
Query: 184 tatttcgagcattgaaaattccttcaattacttaaacagattcttttttttatttaaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttcgagcattgaaaattccttcaattacttaaacagattcttttttttatttaaaat 443

                                                                       
Query: 244 ttaatattttaatttatgtttctgccacagggcccagaggcacctgaactgagcctgacc 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaatattttaatttatgtttcttccacagggcccagaggcacctgaactgagcctgacc 503

                                                                       
Query: 304 tgaaaccttcctcactgaggactagctttcatgatgacataaggtgttatgaaagcctcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaaaccttcctcactgaggactagctttcatgatgacataaggtgttatgaaagcctcc 563

                                                            
Query: 364 aaaggaaaggggcaagcaatagaccttgcctagctaggttgtccatgaa 412
           ||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 aaaggaaagaggcaagcaatagcccttgcctagctaggttgtccatgaa 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)