BAC Information

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BAC

Clone NameMSMg01-457A21
Chromosome10 (Build37)
Map Location 127,891,433 - 127,891,734
singlet/doubletsinglet
Overlap genenone
Upstream geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41
Downstream geneSmarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457A21.T7 (MSMg01no457_a21.b1)MSMg01-457A21.TJ (MSMg01no457_a21.g1)
ACCAG543212AG543213
length751743
length of high quality
(start - end)		437 (49 - 485)387 (85 - 471)
definitionCHROMAT_FILE: MSMg01no457_a21.b1 PHD_FILE: MSMg01no457_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:06 2005CHROMAT_FILE: MSMg01no457_a21.g1 PHD_FILE: MSMg01no457_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGCAAGTCTTTCTTTTAGAATTTTATTTTTTAAGTTGTTG
TTTGGTAGATATCTTTTTTTTTCCCTAGACAGGGTTTCTCTGTGTAGCCC
TGGCCTGTCCTGGAACTCACATTGTAGACCAGGCTGGCCTCAAACTCAGA
AATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGCGCCAC
CACACCTGGCTGGTAGATATCTTTTTTTAAAAGATTTATTTGTTTTATTT
TTATGAATACAGAGTTGCTCTCTTCAGACACACCAGAAGAGGGCATCAGA
TCCCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACT
CAGGATCTCTGGAAGAGCAGACAGTCCTCTTAATGGCTGAGCCATCTCTC
CAGCCCTCTTTTAGAATTTTATAATTTCAAGGTTGTTTTGTTTTGTTTTG
TTTTGTTGGTTTTTTTCTGAGACAGGGTTTCTCTGTGTATCCCTGGCTGT
CCTGGAACTCACTCTGTAGACCAGGCTGGGCTCGAACTCATAAATCTGCC
TGCCTGTGCCACCACTGCCTGGGTAATTTCAAGGTTTATGGTTAAGGCCT
TGAACTCTTTTGGGGAGGTTCTCTTTTTTTCCTAAAAAAATTTGGGTGGG
TCCTTTGGGGTTTTTTCTCCCGGGAGAAAAAAGGGTTTCCTCTTTTTACC
C

NNNTTTTTCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTTCCTCTGAGT
CAGCACTTCATGAATTCACGAAGGACAAAGCCACACACCTTCACTTGACA
ATCCCTAGTCACTATTTTCTTCTTTTAGACAGGGTCTTGTTTTTGTTTTT
CGAGTCAGTGTTTCTCTATGTAGCCCTAGCTGCCCTAGAACTCACTCTGT
AGATCAGGCTGACCAGACTGGATCTTACTAGGTACTGGCCTAGAATTAGC
TATGCAACCCAGGCTAGTCAAACCTATTGTCTTTCCTCAGCCTCTTCAGT
GCTGGAATTATAGGCAAGCTCTACCATTCCTGGGTGTTTTGTATTTTCAA
GATAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTGTAGCCCTGGCTGTCCT
GGAACTAACTTGCTCTGTAGGCCACGCTGGCCTCTGTCTCCTGGGTGCTG
GCNTTAAAGATGAGTACTACCATACCCAGCCTGTTACGATTTACAGGGCC
TTAATATATATTCCGGGTTGGCTGGAACTTGGTGAATATTCAAAAAGGAA
TTCCACTCCCGTCCCACCTTGGGAGGGGGTACGGGAACCGGGAATCTTGG
GTGGGTGGGCACCTGGCACTCCCCCTTTAATTTGAATTGGGAGTCCGGGG
CGTTTTGGTTTACCCTTCATAAATAGGGGGTTACAAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_a21.g1 MSMg01no457_a21.g1 CHROMAT_FILE:
MSMg01no457_a21.g1 PHD_FILE: MSMg01no457_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:06 2005
         (387 letters)



>mm_chr10_127891429_127892215
          Length = 787

 Score =  569 bits (294), Expect = e-166
 Identities = 300/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgttcctctgagtcagcacttcatgaattcacgaaggacaaagccacacaccttcac 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcctgttcccctgagtcagcacttcatgaattcacgaaggacaaagccacacaccttcac 247

                                                                       
Query: 61  ttgacaatccctagtcactattttcttcttttagacagggtcttgtttttgtttttcgag 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 246 ttgacaatccctagtcactattttcttattttagacagggtcttgtttttgtttttcgag 187

                                                                       
Query: 121 tcagtgtttctctatgtagccctagctgccctagaactcactctgtagatcaggctgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tcagtgtttctctatgtagccctagctgccctagaactcactctgtagatcaggctgacc 127

                                                                       
Query: 181 agactggatcttactaggtactggcctagaattagctatgcaacccaggctagtcaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 agactggatcttactaggtactggcctagaattagctatgcaacccaggctagtcaaacc 67

                                                                       
Query: 241 tattgtctttcctcagcctcttcagtgctggaattataggcaagctctaccattcctggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tattgtctttcctcagcctcttcagtgctggaattataggcaagctctaccattcctggg 7

             
Query: 301 tg 302
           ||
Sbjct: 6   tg 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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