BAC Information

Click to search

BAC

Clone NameMSMg01-457K06
Chromosome10 (Build37)
Map Location 28,066,913 - 28,067,340
singlet/doubletsinglet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457K06.T7 (MSMg01no457_k06.b1)MSMg01-457K06.TJ (MSMg01no457_k06.g1)
ACCAG543659AG543660
length775888
length of high quality
(start - end)
428 (47 - 474)221 (78 - 298)
definitionCHROMAT_FILE: MSMg01no457_k06.b1 PHD_FILE: MSMg01no457_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:55 2005CHROMAT_FILE: MSMg01no457_k06.g1 PHD_FILE: MSMg01no457_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCACACGCTAGCTGCACAGAAAGGAAGATCTGTAGGCTGTTGC
TATAGGGTTAGAAGACACAACACATCCGTTCAGTTGAGTGAAGTGGGGCA
GCCATATAAGGATCTCATTGAGAGATCATGGTGAGAAAAGGTGGTAAATA
AGATGGATGATCAGGTAAGGACATGAACAGAATTGGAAGTAGCAACAGCT
GCTGTTGGCAGGACTGACATCAGGCAATAAACGACACAGACTGGGCAGTG
CAGTCAAATTGGAAAGTCTGCGGTTATTTCAGATTAAAGAAGATGAATGG
TTTTGGATCCAGTGGGTAACAGTTAACAGATTTTGAGGAAATGTGAATGC
TGTATAGTATAATCCTCTAAGCCTCAAGGTTTTACTTTTATACTTAGCCT
GTTTCTCATTTTCTGGCTTGAACTAAACTGGTCATTATAACCCTGTGATA
TTTTCATTCCTTTTCTACCTTCATAATCGCCTTCATACTAATGAGTTTAT
TTAAGACGTTCTGGATGTTATCTTTTTACGTATTTTTGCTTTTCTCCCTC
TTGCCTGGTTTGCTCTTTAAATTTCTTCTTTTTCCTTTTGAATGTATTTT
CTTGTGATTTTCTATACTTTTTCTTTTTTTTCAACCTCTTTTCTGCTTTT
CCTTCCTTTTTTACTCCTCCCTCTTATTCTCCCCTCTATCCCTCTTCTTC
TTTCTTCTTTTTTTTTTCCTTTTTG
NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATT
TTTTAATGGGGTTATTTGATTTTCTGAAGTCCATCTTCTTGAGTTCTTTA
TATATGTTGGATATTAGTCCTCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCAATCTGTTGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATAC
TTATCTCCTTGTTCTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACAT
AAAACCAGAGACACTGGAAACTTATAGTTTTTTTTTTGTGGGGAAAAGCC
NTTGAAGATATGTGCCACTGTTTTTTTTAACTCCTTGAACTGAAACAGTC
TATTGGTCTTGTTGTTGGTATGATTTGAGCTAATTGGGACCCACCGGGTG
AACCTTTTTGTATATTTTCCCACAAGGTTTTTCTTGTTATTGTGTTTTTT
ATAATTTTTTTTTTTTAACACTTTTTTCCAGTTTCTTTTTTTCTTTTCTC
TTCCCTCTTTTTTTCTCCTACTGTTATTCTCTTCCTCTCTTTTCTTCTTT
TTTTTTGTCTTTTTCGTCTTTCATTTTTTTTTTCCCTATTCTCTTTTTTC
CGCTCTTTTCTTCTTCCCTTATTATTATTTCATCCTGTAACCTTTTTTTT
TTCCCCCCTCTATGTTTTATTCTAATTCTCATCTTGTTTCGGGCTCTTTT
TGTTGCTTTGTTCTCATCTCTTTCCCATTTTACTCATATTTATTCCTTGC
TGTTTAGTCTCCTCCACCCTATGATTTATTCTCTTACTTTTTCTTATCCG
TCTTGTACTCACTTATTTTGATCCTCCCTATTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_k06.b1 MSMg01no457_k06.b1 CHROMAT_FILE:
MSMg01no457_k06.b1 PHD_FILE: MSMg01no457_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:55 2005
         (428 letters)



>mm_chr10_28066710_28067540
          Length = 831

 Score =  702 bits (363), Expect = 0.0
 Identities = 411/433 (94%), Gaps = 13/433 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagcacacgctagctgcacagaaaggaagatctgtaggctgttgctatagggtt 63
           ||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcaaacacaagatgcacagaaaggaagatctgtaggctgttgctatagggtt 263

                                                                       
Query: 64  agaagacacaacacatccgttcagttgagtgaagtggggcagccatat---aaggatctc 120
           |||||||||||||||||||||| |||||||||||||| ||||||||||   |||||||||
Sbjct: 264 agaagacacaacacatccgttcggttgagtgaagtggagcagccatataagaaggatctc 323

                                                                       
Query: 121 attgagagatcatggtgagaaaaggtggtaaataagatggatgatcaggtaaggacatga 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attgagagatcacggtgagaaaaggtggtaaataagatggatgatcaggtaaggacatga 383

                                                                       
Query: 181 acagaattggaagtagcaacagctgctgttggcaggactgacatcaggcaataaacgaca 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acggaattggaagtagcaacagctgctgttggcaggactgacatcaggcaataaacgaca 443

                                                                       
Query: 241 cagactgggcagtgcagtcaaattggaaagtctgcggtt-----atttcagattaaagaa 295
           |||||||||||||||||||||||||||||||||||||       |   ||||||||||||
Sbjct: 444 cagactgggcagtgcagtcaaattggaaagtctgcgg--gaggca---cagattaaagaa 498

                                                                       
Query: 296 gatgaatggttttggatccagtgggtaacagttaacagattttgaggaaatgtgaatgct 355
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 499 gatgaatggttttggatccagtgggtaacagttaacagattttggggaaatgtgaatgct 558

                                                                       
Query: 356 gtatagtataatcctctaagcctcaaggttttacttttatacttagcctgtttctcattt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtatagtataatcctctaagcctcaaggttttacttttatacttagcctgtttctcattt 618

                        
Query: 416 tctggcttgaact 428
           |||||||||||||
Sbjct: 619 tctggcttgaact 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 831
Length adjustment: 9
Effective length of query: 419
Effective length of database: 822
Effective search space:   344418
Effective search space used:   344418
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)