BAC Information

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BAC

Clone NameMSMg01-457K09
Chromosome10 (Build37)
Map Location 124,058,014 - 124,058,257
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790, 4930503E24Rik
Downstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457K09.T7 (MSMg01no457_k09.b1)MSMg01-457K09.TJ (MSMg01no457_k09.g1)
ACCAG543665AG543666
length754733
length of high quality
(start - end)
245 (75 - 319)245 (79 - 323)
definitionCHROMAT_FILE: MSMg01no457_k09.b1 PHD_FILE: MSMg01no457_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:56 2005CHROMAT_FILE: MSMg01no457_k09.g1 PHD_FILE: MSMg01no457_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATACGCGGA
ATTCACTTTCTTTTACTTAAAATTTTTAATTATATTAACTGTTTTTATTA
GATATTTTCTTCATTTACATTTTACATGCTATCCTCAAAACACCCTATAC
CATCCCCCTGCCCTGCTCCCCAACCCACCCACTCCTGCTTCCTGGCCCTG
GCATTTCCCTGTTCTGGGGCATATGAAATTCCCAAGACCAAGGACCTCTC
CTCCCATTGATGGCCGACTAGGCTATCCTCTGGTACATATGCAAATAGAG
ACACTTAAATAAATACAGTAGATCACTGCTAAATAAGTAGAAGCCCCATG
AATTCACTTTCTAAATCAAAATGTCAACCAACAGTCAGTAAGTTTAACAA
TGCCTATATTTTTCTTCCTTGGAATTGAGCTTTGACTAGGCTTTCAAATT
GATGGAAGCCACACTGGCCCCAATTTTCAACAGGTAGTAGATTTAATATG
AAGTATATGGATACAGCAAGACAGTGTGCCTTTCTAACTGAAATGGGGAT
ATTTTGTTACAAATACTCTCCTGTGGGTGGAGCCATAAAAACACCAGCTT
TCAAGCTTTTTTCCTCATCACTGGCTGAATCACAAGCCATTCCTTTCATT
TTTGATCACTTTATAAATAATTATCCTTATAATTTAAAAATTATGCTTGA
ATGAACAATCTAAAAATTGTAAATCCCAGCCATTGAAATAACCCTTAATA
AAAG
NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAAATCCAATCTCCTAGTC
TCACTTTTAAGTAGTATTTGAAATTTCTAAAGCTTGACTTAAGCATGTGA
AACTGTAACTCTCTGCTTTCTGATGTCGTAGATCCTAGTAATTGGAGAGA
AGATTGCAGCAGAGAGCTTAAAGCTTCAGTCAGAAATTGCTGAATGCATG
CAATTTTTAGTGTGAAAGTTCCCAATCCCGAAGTTCATACGATTCAAGTG
GCCTCCACACTAATGAGCTTTGTGATCNTCCTAAGAAGAAACACAAATTT
CAGATCTTTTCAACATGAATAAACATATGACTTCTGGATGGTTATTTTCT
TTGTATTGTTTCAATGTTGAAAGGGAGTTTTAATTAATGCCTTCCTTTCA
ACCTAACCATAACTACAATGTGTCTCTGGAGGAAGGAGTCTGCACAGAAA
GAGTTCTTTTACAATGATTTATTCTGTGCTCTTTCATAGCAGTTATTTTT
ATTTTTTTTCTATCAAGAAGGAGAATATCATTGTTTCTTATGGGTGGAAA
TCTGAATGTCTGTGCCCATTACAAGATATAGGATTGATACCAGATCAAAC
ATGAGGTATTTTTTTTTTTTATTTGTAGTATCTGATACCAATCTGGTAAT
TATATTAAAATTTTCCCTTTTCACAATATATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_k09.g1 MSMg01no457_k09.g1 CHROMAT_FILE:
MSMg01no457_k09.g1 PHD_FILE: MSMg01no457_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:56 2005
         (245 letters)



>mm_chr10_124057814_124058458
          Length = 645

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaaatccaatctcctagtctcacttttaagtagtatttgaaatttctaaagcttgac 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 ataaaaatccaatctcctagtctcacttttaagtagtatttgaaatttataaagcttgac 385

                                                                       
Query: 61  ttaagcatgtgaaactgtaactctctgctttctgatgtcgtagatcctagtaattggaga 120
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaagcatgtgaaactgtaaggctctgctttctgatgtcgtagatcctagtaattggaga 325

                                                                       
Query: 121 gaagattgcagcagagagcttaaagcttcagtcagaaattgctgaatgcatgcaattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 324 gaagattgcagcagagagcttaaagcttcagtcagaaattgctgaatgcatgcaatttaa 265

                                                                       
Query: 181 agtgtgaaagttcccaatcccgaagttcatacgattcaagtggcctccacactaatgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgtgaaagttcccaatcccgaagttcatacgattcaagtggcctccacactaatgagc 205

               
Query: 241 tttg 244
           ||||
Sbjct: 204 tttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)