BAC Information

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BAC

Clone NameMSMg01-457P22
Chromosome10 (Build37)
Map Location 55,543,003 - 55,543,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457P22.T7 (MSMg01no457_p22.b1)MSMg01-457P22.TJ (MSMg01no457_p22.g1)
ACCAG543928AG543929
length767754
length of high quality
(start - end)
433 (50 - 482)474 (80 - 553)
definitionCHROMAT_FILE: MSMg01no457_p22.b1 PHD_FILE: MSMg01no457_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:26 2005CHROMAT_FILE: MSMg01no457_p22.g1 PHD_FILE: MSMg01no457_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTTACTTTCTTATTTTTTTGGATTGGATTTACAGTATTTG
ATGTGAATTTCTTTCTATGGAGCAGGCTTCAAATTCAATATGAAAATTTT
AGGTTATCACTATAACAGATTTGCCACTATTACACCAGTGGGCTTCTCTT
CCCTGGAGGGGTCAGCAGTGTAGATGCAAAGTCCACAGCTGAATAATATT
GCTGAATTCAGCTATCCTCCAGCAGTACGAATATCTCCTAACAATACAAA
GAGTTCCTGAATGTCAGTTCAGTATCTGTGAGCTTCTATGAGCCCTGGTT
AGTTGAGACTGTGGACAGTGTTCTTGTGATGTCCTTGAACTCTCTGACTC
CTACAATCCTTCCTTTCCCTCTTCTACAGAATTGTTGGGCACCTTTCAAA
TTAATGTTGATGTGGAGGTCCCATCCCATTGTGAGTGGTGACATTGTTAG
GTTGGTAGTCCTGGGCTCTGTAAGAAAGCATGCTGTGCAAACCATGTGTA
GCAAGTCATACTTCTTTCAGCCCCTCTGGGTTAGCTCCTGCCTTCCCGTA
AGGTAGAAGCTGCTAAGCCCAATTCCCCGTTTAAGTTTTCTATGGTCCAG
GGGCTAATGCTATTTTTCTCCCTAAACCACAGGGATTTCCTCACCTAATT
TTTGGGTAATAAAACTAAACGCGCTCTTTATACCACCGTGGGGTTTATTT
ATACCCTTTTTCTATTT
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGTGACACACTATTGG
CTTATTCAAACATCAGCAGAAAAATTACATGTACGTGCAGGGTGTCAGAG
TTCTGTGAGTTTTTGACTCAGTTCAGACAGCCCTGTTATGTCCTCACATT
CCTCCTTATCTTATGGTCAAGCTGTTCCCAGGAATGTTTTAACTACTGGG
CATACCAGGGTTTGTTTTTCTCTATTCTCAGCCCCAGGCAGCCTCTAGGC
TCACAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTG
AAATTTCATCTTTCTTTCACTAGCAATTGGGCAAAACGTTCCTCTCCAAG
GACATATGGCATGACTACATTCAGCCAGTCAGAGACTATTTTCCTAAGCC
CATATGCTGGGATAAAGTCAACCCCATCCAGGAACTGTCTGTGTGAGCAA
ATCACTAATATGAAACTGTTGCAGCTTGGATACATGATCTAGTAACCTGT
GTGCTAAAGGCTTGGTTCCCAATCAGTGCTGCAACTGGTCGGTGGAATCT
TTATGATGGATGTAACAGACAGTTTGAGTTCCCTGAAAACTTGCTTTAAA
AATGGATAATAGGATTTTAAAATTCTCCTTTTTTTTTCTTCTTTTATTCT
CTTCTTCTTTCCCTTTTTTCACTTTGGGGGGGGGGATGACTTTCCATTTT
CCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_p22.g1 MSMg01no457_p22.g1 CHROMAT_FILE:
MSMg01no457_p22.g1 PHD_FILE: MSMg01no457_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:27 2005
         (474 letters)



>mm_chr10_55542803_55543676
          Length = 874

 Score =  909 bits (470), Expect = 0.0
 Identities = 473/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatagtgacacactattggcttattcaaacatcagcagaaaaattacatgtacgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatagtgacacactattggcttattcaaacatcagcagaaaaattacatgtacgtgca 260

                                                                       
Query: 61  gggtgtcagagttctgtgagtttttgactcagttcagacagccctgttatgtcctcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtgtcagagttctgtgagtttttgactcagttcagacagccctgttatgtcctcacat 320

                                                                       
Query: 121 tcctccttatcttatggtcaagctgttcccaggaatgttttaactactgggcataccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctccttatcttatggtcaagctgttcccaggaatgttttaactactgggcataccagg 380

                                                                       
Query: 181 gtttgtttttctctattctcagccccaggcagcctctaggctcacaaacaaccagcaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgtttttctctattctcagccccaggcagcctctaggctcacaaacaaccagcaatt 440

                                                                       
Query: 241 tctgagtactttatatgacttacaggtcttgaaatttcatctttctttcactagcaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgagtactttatatgacttacaggtcttgaaatttcatctttctttcactagcaattg 500

                                                                       
Query: 301 ggcaaaacgttcctctccaaggacatatggcatgactacattcagccagtcagagactat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaaaacgttcctctccaaggacatatggcatgactacattcagccagtcagagactat 560

                                                                       
Query: 361 tttcctaagcccatatgctgggataaagtcaaccccatccaggaactgtctgtgtgagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcctaagcccatatgctgggataaagtcaaccccatccaggaactgtctgtgtgagca 620

                                                                 
Query: 421 aatcactaatatgaaactgttgcagcttggatacatgatctagtaacctgtgtg 474
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 aatcactaatatgaaactgttgcagcttagatacatgatctagtaacctgtgtg 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)