BAC Information

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BAC

Clone NameMSMg01-458M07
Chromosome10 (Build37)
Map Location 34,899,081 - 34,899,324
singlet/doubletsinglet
Overlap genenone
Upstream geneDse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585, LOC667860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458M07.T7 (MSMg01no458_m07.b1)MSMg01-458M07.TJ (MSMg01no458_m07.g1)
ACCAG544520AG544521
length767748
length of high quality
(start - end)
446 (75 - 520)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no458_m07.b1 PHD_FILE: MSMg01no458_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:27 2005CHROMAT_FILE: MSMg01no458_m07.g1 PHD_FILE: MSMg01no458_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAAAGGCGC
GGAATTCTGCACTTTTCATCTAATCCTGGGCTTTTTTTTTGTTGTTGTTT
GGTAAATTGTAATGACTGTTTCTTTAGGGGCCATGGGACTATTTAGATGG
TATATCTGATCCTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAAATT
TCACCTAGATGTTCTAGTTTTGTTGAATATAGGCTTTTGTAGTAGCTTCT
GAAGATTTTTTTGAATTTCCTCAGTTTCTGTTGTCATATCTCTCCTTTCA
TTTCTGATTTTGTTAATGTATTTTCTGTCTCTGTGCCTTCTGATTAGTTT
GGTTAAGGGTTTATCTATCTTGTTGATCTTTTCAAAGAACTAGTTCCTGG
CTTTGTTGATTCTTTGTATTTTCTTTCTAGTTCTTTTTGTTTTGAATTGG
TTGATTTCAACCCTAGTTTGATTTTGTTTTCCTGCTGTCTACTCATTTGA
GGTGAATTTTGTTTCTTTTTGTTCTAGAGCTTTCAGGTGTGCTGTTAAGC
CCCTAATGTATGGTCTCTCCAGTTTCCTTTTTGGATGCTCTCAGAGCCAT
GAGTTCTCCTCTTAGGACTTTTTTCATTTGTGTCCCATAAAATCTGATTT
TGGATGTGCCCTTCATTTTCTCCCCTTTTATTTTTACGACGTTCTCTAAT
TTCCCTCCTCTAAATCCTGCCCTGACCACCGCTTTCATCGCCCTAGGACC
TCATGTTTAATCTTTCN
TCGATGAAGTGGGAGGCCGGGCGGNCGCCTGGTTCCAAAAATTTAGGNGA
ACTATAGAAGTTTCGAAAAATTCCCTAGGGNCTGGGTTAGTTGACTCTGT
TGGTCTTCCTATAGAGTCCTTGTTCTCTTCAAGTCTTTCAATATGCACTG
GTCCAGCCAGTGGAAAGTCAAACAGTCCTCTGAAGTGGAAATGAGGATGA
TTATAGAAAACACAGAAAGAAGAGTCAGAGGCAAAAGTTAGAAATTGGGA
TTTCTGCAGGTCTATACCATGCCAGTCCTGAATGTATTTCTTATAACCTT
TATATATTTTATAGTATTACTAATTATAAAGTCACAAACTAGCAGACACA
ATGGCTGATGCACATTACATATCTATTTCCATACAGAGGCCTCCCTGTTC
CTTAACCAAGATTAATTGAACATTCAGCTCTTTGCCTTGAGTTTATCCTT
CCATGTGTCAGCAGGCCGGGAACTATATCAGCAGACACTGACCTGCCTTG
ACTCTGCCTGACAGGCAGACTTTCATAAAAGCAGGAAAAAATGGCTCCTG
ACATCTATCTTTCCCCCAACTCTTTCACAAAACTCTGTGAGCTCAATCTA
ATGTTTGGCTGTGGCTCTTTGCATCAGTTCTCATTGGCTGACGGCTATAG
CCTCTTATATCACCATTATGATAGTCTCCTGTTCTGCCGCATAATAGAGC
ATCATTGACAGTATGAAGGCTTTCTTCTTGTCCATGGCCCGCGCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_m07.g1 MSMg01no458_m07.g1 CHROMAT_FILE:
MSMg01no458_m07.g1 PHD_FILE: MSMg01no458_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:27 2005
         (246 letters)



>mm_chr10_34898810_34899455
          Length = 646

 Score =  435 bits (225), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctagggnctgggttagttgactctgttggtcttcctatagagtccttgttctcttca 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tccctagggtctgggttagttgactctgttggtcttcctatagagtccttgttctcttca 456

                                                                       
Query: 61  agtctttcaatatgcactggtccagccagtggaaagtcaaacagtcctctgaagtggaaa 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 actctttcaatatgcactggtccagccagtggaaagtcaaacagtcctctgaagtggaaa 396

                                                                       
Query: 121 tgaggatgattatagaaaacacagaaagaagagtcagaggcaaaagttagaaattgggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 395 tgaggatgattatagaaaacacagaaagaagagtcagaggcaaaagttagaaattgggag 336

                                                                       
Query: 181 ttctgcaggtctataccatgccagtcctgaatgtatttcttataacctttatatatttta 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcctgcaggtctataccatgccagtcctgaatgtatttcttataacctttatatatttta 276

               
Query: 241 tagt 244
           ||||
Sbjct: 275 tagt 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)