Query= MSMg01no458_n14.b1 MSMg01no458_n14.b1 CHROMAT_FILE:
MSMg01no458_n14.b1 PHD_FILE: MSMg01no458_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:33 2005
(246 letters)
>mm_chr10_111179147_111179792
Length = 646
Score = 391 bits (202), Expect = e-113
Identities = 237/250 (94%), Gaps = 4/250 (1%)
Strand = Plus / Plus
Query: 1 gatactttttcttacagtggttactcaaggaaattcctttttgtctctcactcattataa 60
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 197 gatattttttcttacagtggttgctcaaggaaattcctttttgtctctcactcattataa 256
Query: 61 actataaaata-acaaaacaaaacaacaacaac---aaaacaaacccaaagaaatcaaat 116
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 257 actataaaatagacaaaacaaaacaacaacaacaaaaaaacaaacccaaagaaatcaaat 316
Query: 117 gatctttaactgtttcatagaataatctgcatgaggattttcatgtaagcacagtagtga 176
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 317 gctctttaactctttcatagaataatctgcatgaggattttcatgtaagcacagtggtga 376
Query: 177 cagtcatttttgtttcatttaggcacaacacttatacgtattaataagaatgttgaataa 236
|||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct: 377 cagtcagttttgtttcatttatgcataacacttatacgtattaataagaatgttcaataa 436
Query: 237 tttgatacaa 246
||||||||||
Sbjct: 437 tttgatacaa 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no458_n14.g1 MSMg01no458_n14.g1 CHROMAT_FILE:
MSMg01no458_n14.g1 PHD_FILE: MSMg01no458_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:33 2005
(327 letters)
>mm_chr10_111361796_111362522
Length = 727
Score = 592 bits (306), Expect = e-173
Identities = 320/325 (98%)
Strand = Plus / Minus
Query: 1 tttgtgngcgtaacagtcacacatgctgtatcgttcagaaacaaaggcattatctatgca 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tttgtgtgcgtaacagtcacacatgctgtatcgttcagaaacaaaggcattatctatgca 466
Query: 61 ataaaatgaaggagttaaatgttgctctttgaagaaggaaaggaatactggatgaagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 465 ataaaatgaaggagttaaatgttgctctttgaagaaggaaaggaatattggatgaagtgg 406
Query: 121 ttcaaggtgttactgaagatagagtgtgaagactatgagcgcattgtatacctgcttcag 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 405 ttcaaggtgttactgaagatagagtgtaaagactatgagcgcattgtatacctgcttcag 346
Query: 181 tctccaacaggaacagcatgaattccaccaaagtggagacattgtttctttaaaccctaa 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tctccaacgggaacagcatgaattccaccaaagtggagacattgtttctttaaaccctaa 286
Query: 241 ttacagcccacagaccagggagcaggagggattagttgagcattcctgcctttcatggaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 285 ttacagcccacagaccagggagcaggagggattagttgagcattcctgcctttcatggga 226
Query: 301 aaccagagagggtaggcgagaaaaa 325
|||||||||||||||||||||||||
Sbjct: 225 aaccagagagggtaggcgagaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
