BAC Information

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BAC

Clone NameMSMg01-458O19
Chromosome10 (Build37)
Map Location 93,118,579 - 93,306,721
singlet/doubletdoublet
Overlap geneNtn4, LOC667338, LOC100041907, Usp44
Upstream geneNedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873
Downstream geneMetap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458O19.T7 (MSMg01no458_o19.b1)MSMg01-458O19.TJ (MSMg01no458_o19.g1)
ACCAG544640AG544641
length743767
length of high quality
(start - end)
256 (339 - 594)392 (75 - 466)
definitionCHROMAT_FILE: MSMg01no458_o19.b1 PHD_FILE: MSMg01no458_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:39 2005CHROMAT_FILE: MSMg01no458_o19.g1 PHD_FILE: MSMg01no458_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,118,579 - 93,118,834)(93,306,330 - 93,306,721)
sequence
TTTTTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATCGAGTTTTCATGAACGGGAGGACATAAAGTATATA
AAACGTCAAGTAAGATGAAAATTGGAAGCAGTACTCTAGGTTTCCACAAG
AGGCACAAAGTCAATCAGAGAGAAGAATGGACAGCGACCGGGCCTGAGTG
ACAGTGGAGAGGCAAGGAGGGCAGAGCCGAGTCGGAGGAGAACAAAATCT
TTGTAAGTCACACAGAAAGAGCTATGCTCGTTTTAGGGACCTTTGCCTCG
GAGGGCTCTGTACTCTTACATTGTTTAAAACTCTTTTTCTCATGTGTTAC
CTAGGTTTGTCTCAAACTGGACACACGTGACCCTCCAGCCTCAGCCTCAG
CCTCAGCCTCAGCCTCAGCCTCAGCCTCCTGGGCACGCACCCACTTGCCT
ACACATCATCCTGCCTTTCTTGATTCTGCATCCTGTTTCAGTCCTCAAAG
CTGCACCTCTAGGAGTAACAACATTCTGCTGCCTAACGTTTTATGAAATT
TGATTTGGAGAACAGGATGTTGGAGGGCATCTACCAAAGGCACTGGGGCT
GGACNACCAATATCTTGTAAATGGAAATGTATACATTTGGCAGCAAATTT
TTAAAACAAAACCTATTCGTGCTTTAATTAATGTTGCGGATTTTGGCAAA
GAAAAAAAGCCAAGAGGCAGTTTGCCCTTGAGGGGATGTCCCA
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGCGGAGGAGAACGGAGGAGAATCAG
CTCTGGAGGCGACAGAGCAAACTGATGGCAAAGAGGCTGCAGAATTAGGA
AAGTGCAGCTGCCATGGTGGAGCAGGTTTGAAGAAGGGAGCAGAGACAGA
GCTACCCACTTACAGGAGACAAAAGCCTGCTACCCACTCCTGGGAGTTGT
CTCTGACCTCCACACGCTCACGGAAGCATATACAAACAAAAAATGTAACT
GTAAAAAAAAAATGCAGACATGTCTTCTGGCTGCTCTTCCAGAAGACCCG
GGTTGGATTCCCTATACCTACACAGTGTCTCACAATTACCTGGATCAGGG
AATCCAACGCCCTCTTCTGGTCTCCAAGGGCACCAGGCATGCACATGGTG
CCCATTTATTTATACATGCATGCAAAGCATACAAGTCATAACATTTTAGA
CATTAAATATAGTGAAGGGCTGGCCAGGTGGCTCAGCGCGTAAAGGTGCT
TGCCGCCAAGTCTGAAGAAGTTCCATCTGGAGGGACCCCCACGGTGGAAG
GACAGACTCCACTCTCATACACTGGCCTCTTGTTCTCTCCATGAGAACCA
GGGCTTACCCCTGTTTATCCACTACCAGACCTGTTATTTTTAAAATGCAG
ATGAAAACAGCTACAAATTAACCTCTCCGGGCACCTCCCCTCCGCAATCC
TTATTTTGCTCTCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_o19.b1 MSMg01no458_o19.b1 CHROMAT_FILE:
MSMg01no458_o19.b1 PHD_FILE: MSMg01no458_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:39 2005
         (256 letters)



>mm_chr10_93118379_93119034
          Length = 656

 Score =  495 bits (256), Expect = e-144
 Identities = 256/256 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatgtgttacctaggtttgtctcaaactggacacacgtgaccctccagcctcagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatgtgttacctaggtttgtctcaaactggacacacgtgaccctccagcctcagcctc 260

                                                                       
Query: 61  agcctcagcctcagcctcagcctcagcctcctgggcacgcacccacttgcctacacatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctcagcctcagcctcagcctcagcctcctgggcacgcacccacttgcctacacatca 320

                                                                       
Query: 121 tcctgcctttcttgattctgcatcctgtttcagtcctcaaagctgcacctctaggagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgcctttcttgattctgcatcctgtttcagtcctcaaagctgcacctctaggagtaa 380

                                                                       
Query: 181 caacattctgctgcctaacgttttatgaaatttgatttggagaacaggatgttggagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacattctgctgcctaacgttttatgaaatttgatttggagaacaggatgttggagggc 440

                           
Query: 241 atctaccaaaggcact 256
           ||||||||||||||||
Sbjct: 441 atctaccaaaggcact 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no458_o19.g1 MSMg01no458_o19.g1 CHROMAT_FILE:
MSMg01no458_o19.g1 PHD_FILE: MSMg01no458_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:39 2005
         (392 letters)



>mm_chr10_93306274_93307065
          Length = 792

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcggaggagaacggaggagaatcagctctggaggcgacagagcaaactgatggcaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgcggaggagaacggaggagaatcagctctggaggcgacagagcaaactgatggcaaaga 389

                                                                       
Query: 61  ggctgcagaattaggaaagtgcagctgccatggtggagcaggtttgaagaagggagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggctgcagaattaggaaagtgcagctgccatggtggagcaggtttgaagaagggagcaga 329

                                                                       
Query: 121 gacagagctacccacttacaggagacaaaagcctgctacccactcctgggagttgtctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gacagagctacccacttacaggagacaaaagcctgctacccactcctgggagttgtctct 269

                                                                       
Query: 181 gacctccacacgctcacggaagcatatacaaacaaaaaatgtaactgtaaaaaaaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gacctccacacgctcacggaagcatatacaaacaaaaaatgtaactgtaaaaaaaaaatg 209

                                                                       
Query: 241 cagacatgtcttctggctgctcttccagaagacccgggttggattccctatacctacaca 300
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 cagacatgcccactggctgctcttccagaagacccgggttggattccctatacctacaca 149

                                                                       
Query: 301 gtgtctcacaattacctggatcagggaatccaacgccctcttctggtctccaagggcacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gtgtctcacaattacctggatcagggaatccaacgccctcttctggtctccaagggcacc 89

                                           
Query: 361 aggcatgcacatggtgcccatttatttataca 392
           ||||||||||||||||||||||||||||||||
Sbjct: 88  aggcatgcacatggtgcccatttatttataca 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)