BAC Information

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BAC

Clone NameMSMg01-459F10
Chromosome10 (Build37)
Map Location 119,140,993 - 119,141,438
singlet/doubletsinglet
Overlap geneGrip1
Upstream geneLOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417, Cand1
Downstream geneHelb, Irak3, Tmbim4, 1190005P17Rik, Hmga2, LOC100042902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459F10.T7 (MSMg01no459_f10.b1)MSMg01-459F10.TJ (MSMg01no459_f10.g1)
ACCAG544957AG544958
length764777
length of high quality
(start - end)
467 (44 - 510)401 (73 - 473)
definitionCHROMAT_FILE: MSMg01no459_f10.b1 PHD_FILE: MSMg01no459_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:14 2005CHROMAT_FILE: MSMg01no459_f10.g1 PHD_FILE: MSMg01no459_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTACTCCCTAAGCCCAGTGCTCAGGCAAAAACTGCCCTTGCCACAA
AAACAGAGAATACTGATGCTTATGATTGCTTTATTGTTTGTTTTTTTATA
TCAGTTGCTTATATCAAACTCCTTCCTAGTCTTTGAAATTCGTGGCACAA
TAGAACACATTATGGTTTATATGTGCAATGGGCATGCTTGTTTCCAGACA
CAAAGCCAGGTTGCAAAGGCTATGTGTTTATACCCAACTCTACCACAGTC
CTCTGTGCCTAACGGTTAATTGAGCCTCATGCCTGACCACTGTTGATTAC
ATCTCTAGCAATAAATAGGTATAAGTAGAGAAACCTGTCATTTACTAGAA
TATTAATTATTTTATCAATGTTTGTGAAATATGACTTATCTTTACTATTT
AAAAATGTATCCAACATACGATTAAAAAAATATTTTTTTTTGATGATTGT
CTAAACTGCTTTTCATGAGATGCATTTAAGCAAGGAACTTCAAATCTATG
GGCAACTTCAGCATCCTGGCCATGTTTGGGGAAAACCAGTGTCTCTGGTT
GCTGCTGAAATGGCCTTGGGTTTTCATGGGTGGTTCCGCTGGCCTGGTAT
GTGTTTCATAAATTTCCCGCTCCTAAATAGTCTTTGTTTGTGGAGCCTTA
CCTCCGAAATCAATTCAACCTTACCCATAAACGAGGGGGCCACCCAATTG
CCTTTTTTTCCCCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGTATATTGTTCCTTGCTAGGCTATA
CATATACAACAGGATATATATATATATATATTCATTCCTCTGATTTGCAG
GAGTCATTTGTTAGTTTTGGGTGAATTTCCTTTAAAAATATAATCTCCTT
ATAGGGCATTATGATGTCTGCCTTATAAAGATAATTCATGTGCAAATAGG
GGTTTTTCTTTTCTACATACATACATGTATTTTCTCCCTTTCTTAGGTAT
TGTGAGAGCTTCTAACTCTATGTTGAATTAAACTGGAGGCATGGGCAGCC
TGAGCTTTTATCAGTCTTGGGGAAAAAGCACCTGGGGTTCCATCATTATG
GAAGCTATAGGCCTTTTCTCTATAAATAAACAGAGGTTAATCATTATTCT
TAACTTTCAAAGAGATTTTTATTTATTTATCTTTGGGCGGTAAACGACAT
CCTATTTTAAGGGATTAGAGACTTTTTTGTAGCTGGAGAATACCCTTTAC
TCTTTATCTGATAAATGCCCATGTTCACAACTGTGCCTATATCGTTGGCC
CCTCCTTGTCTCGTCTGCCTTTTAATAAAAAACCTGCCAGCGCCCGGGGG
TCACTTTGCCTACTCCCCTCACCCCCGTTTTTCTTCCCTCCCTTGTTTGC
GGTTTCTCTTCCATAAGTTCTTCTTTTCCCGCCGCTTACCTTACCTTTTT
CTTCTCTCTGTTTCTTCCCGTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_f10.b1 MSMg01no459_f10.b1 CHROMAT_FILE:
MSMg01no459_f10.b1 PHD_FILE: MSMg01no459_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:14 2005
         (467 letters)



>mm_chr10_119140774_119141641
          Length = 868

 Score =  826 bits (427), Expect = 0.0
 Identities = 442/447 (98%), Gaps = 2/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 20  taagcccagtgctcaggcaaaaactgcccttgccacaaaaa-cagagaatactgatgctt 78
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 220 taagcccagtgctcaggcaaaaactgcccttgccacaaaaatcagagaatactgatgctt 279

                                                                       
Query: 79  atgattgctttattgtttgtttttttatatcagttgcttatatcaaactccttcctagtc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atgattgctttattgtttgtttttttatatcagttgcttatatcaaactccttcctagtc 339

                                                                       
Query: 139 tttgaaattcgtggcacaatagaacacattatggtttatatgtgcaatgggcatgcttgt 198
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tttgaaattcgtggcataatagaacacattatggtttatatgtgcaatgggcatgcttgt 399

                                                                       
Query: 199 ttccagacacaaagccaggttgcaaaggctatgtgtttatacccaactctaccacagtcc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttccagacacaaagccaggttgcaaaggctatgtgtttatacccaactctaccacagtcc 459

                                                                       
Query: 259 tctgtgcctaacggttaattgagcctcatgcctgaccactgttgattacatctctagcaa 318
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctgtgcctaacggggaattgagcctcatgcctgaccactgttgattacatctctagcaa 519

                                                                       
Query: 319 taaataggtataagtagagaaacctgtcatttactagaatattaattattttatcaatgt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 taaataggtataagtagagaaacctgtcatttactagaatattaattattttatcaatgt 579

                                                                       
Query: 379 ttgtgaaatatgacttatctttactatttaaaaatgtatccaacatacgattaaaaaaat 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttgtgaaatatgacttatctttactatttaaaaatgtatccaacatacgattaaaaaaat 639

                                      
Query: 439 atttttttttgatgattgtctaaactg 465
           ||||||||| |||||||||||||||||
Sbjct: 640 atttttttt-gatgattgtctaaactg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)