BAC Information

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BAC

Clone NameMSMg01-459J10
Chromosome10 (Build37)
Map Location 66,445,389 - 66,445,760
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459J10.T7 (MSMg01no459_j10.b1)MSMg01-459J10.TJ (MSMg01no459_j10.g1)
ACCAG545145AG545146
length763842
length of high quality
(start - end)
385 (71 - 455)103 (72 - 174)
definitionCHROMAT_FILE: MSMg01no459_j10.b1 PHD_FILE: MSMg01no459_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:34 2005CHROMAT_FILE: MSMg01no459_j10.g1 PHD_FILE: MSMg01no459_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGCTGAGCCGCGGAAT
TCAGCCCTTACATCATTAGCTCCTAAGGTTGGGTGTCACTTGAGCAGGAA
AGGAAATTAGTTCTCACCCATTTTCATATTTCATATTCTAGTCAAACCTT
TATTTGAGAGGTTCAGAAAGCTTAAGTTCAAGTCTAATTAACATTTAAAT
CTGTTTTATTCATCACCATGAGTGTGCATATGTGTGAAGGGAGTGTGTGT
ACATGCGTGCCACTGGGCACACACGGAGGTCAGAGGACAACTATGTGGAG
TCAGTTTTTTCCCTTTTCTTTATGCAGGTCTTAGAGATTGGACTCTGGTC
ATTTGGCTGTCTCTGCAAATATTCCCTCCTCCCCCACTCTCCCAGTAGTC
TTGCTGGCTGCAGCATCCAAACTTTAAAATTATTTCTCTCTCTCCTGACT
TTAATTTTTAATGCATGGCTGCTATCCACAACCCCTGATCTATAGTTGGC
TATTGTCTGTTATCCAGAGGTCCGAGAACATTTCCTTTATCACTGCCTCC
GGACCCTACTGTCTGCATAATGGGTGATCTTTATGTTCTTTCTATTGCGA
AATGCCTTACGGTGTCCTTTTGACCTGCGCCCTCTCTCTTTTCCCTTATT
TTTTTCCTCACTTCTCCCCTCCTCCCTCCTCTTCCCCCCCCCTCCTTTTT
CCCTTCCCCTTTTACCTCTTTTACACTTATGTTTTCTCCCGCTCCTTTCC
TTTTTCTTCTCTT
ATGCTCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTAGTAAATGTTCATCTTCCAGTCTCT
CGGTCATCTCAGGGCACAACCTCTAAGTTTTAAATGCTTATTTTTAAGTG
TGTGTGTGTGTGTGTGTGTGTGCATGCGCGCGCACGCGTGTGCTCATGCC
TGCCCGTCCCGCCTGTATATCTTGCGACCGCCCCCACCTCTCCTATCCCC
AATACACCGCCCATCTCCCTGTACCTGGACCCCCTGATTTCTTGTGACCC
CCCCGACATCACCCCTTCTCTTTACTCCACCCTCTCTTCCACCTCCCCTA
CTGCTTCTCCCCCTTGTTCCGCTCCCCCGCCCCCCCCCCCCCTATCTTCT
ATCTTCCTCCCCTTTCCCCCCCCCCTTACCTTTCTTCTCCCCCCCTTCCC
CCCCCTCCCCCCCACCCCTCCTCCCCCCCCCTTTTTATTACTCCTCTCCC
CCCTCCTTTTTACCCCCCCCCTTTACCTCCATCTCTATTCTTTCCTTACC
TCTTCTCCTCCCCCCCCCCTCCTCCTCTATCCTCCCCTCCCCTTCCCCCC
CTCCTCCCTTTTCTCTCCCCCTATCTCCTTTCTCCCCCCCCTTCTCCTCC
CCCCTCCCTTCTCCCTTGTCATCGTCCCCCCCCCACGGCCCCATTACCTC
TCCCTCTCCTCTCCCCTTTCCCCCTTTTCTCACCCCACCTCTCCCCTTTT
TCCCTCTTCTCCTCTCCCTCTCCTCCTCCTTCTTCCCCCCTCCTATCCTT
TACCCTTTTCTCTCTCTCCGCTCGCTCCTCCCCTCTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_j10.b1 MSMg01no459_j10.b1 CHROMAT_FILE:
MSMg01no459_j10.b1 PHD_FILE: MSMg01no459_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:34 2005
         (385 letters)



>mm_chr10_66445389_66446173
          Length = 785

 Score =  621 bits (321), Expect = 0.0
 Identities = 359/375 (95%), Gaps = 7/375 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctaaggttgggtgtcacttgagcaggaaaggaaattagttctcacccattttcatatt 60
           ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 372 tcctaaggttgggtgtcacctgagcaggagaggaaattagttcacacccattttcatatt 313

                                                                       
Query: 61  tcatattctagtcaaacctttatttgagaggttcagaaagcttaagttcaagtctaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcatattctagtcaaacctttatttgagaggttcagaaagcttaagttcaagtctaatta 253

                                                                       
Query: 121 acatttaaatctgttttattcatcaccatgagtgtgcatatgtgtgaagggagtgtgtgt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 252 acatttaaatctgttttattcatcaccatgagtatgcatatgtgtgaagggagtgtgtgg 193

                                                                       
Query: 181 acatgcgtgccactgggcacacacggaggtcagaggacaactatgtggagtcagtttttt 240
           ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 192 acatgcgtgccacagggcacacatggaggtcagaggacaactatgtggagtcagtttttt 133

                                                                       
Query: 241 ccctttt----ctttatgcaggtcttagagattggactctggtcatttggctgtctctgc 296
           |||   |    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ccc---tccacctttatgcaggtcttagagattggactctggtcatttggctgtctctgc 76

                                                                       
Query: 297 aaatattccctcctcccccactctcccagtagtcttgctggctgcagcatccaaacttta 356
           ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 75  aaatattccctcctcccccactcccccagcagtcttgctggctgcagcatccaaacttta 16

                          
Query: 357 aaattatttctctct 371
           |||||||||||||||
Sbjct: 15  aaattatttctctct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)