BAC Information

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BAC

Clone NameMSMg01-459P04
Chromosome10 (Build37)
Map Location 16,313,460 - 16,313,788
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637043, LOC100039492, LOC671439, LOC382457
Downstream geneLOC546472, LOC100039576, LOC627511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459P04.T7 (MSMg01no459_p04.b1)MSMg01-459P04.TJ (MSMg01no459_p04.g1)
ACCAG545420AG545421
length749799
length of high quality
(start - end)
369 (50 - 418)137 (77 - 213)
definitionCHROMAT_FILE: MSMg01no459_p04.b1 PHD_FILE: MSMg01no459_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:03 2005CHROMAT_FILE: MSMg01no459_p04.g1 PHD_FILE: MSMg01no459_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGGAGCAGCACCTTCTTTTTTGGGCCATGCATGTGGACA
TCACTCTGCTTACCTTGTCATCCAGAACTCTATCCTTATCACAGCACTCA
TTGGCATGTCCTTTTCTTCCTTGGGCTTTCTAGGTCTACATTTCCATTCT
TATATATCCACTAGTCACCAGGGCTGCAAGCCCTGCTCTGATATGACTTC
ACTGTGACTAATTATGTATGAAATGGCACTTTTACATGAAGTTCTGAGGG
ATAGAACCTCAATATGTACATTTATAGGGAATGGGTTGGAGGAGCATTTC
AACACAATAGGTTGAAATGACCCTAAAACTCCACGGAACTCAACAGGGTA
TTCAAATTCATTTCGTCATTGTTTGTTTCAGGGGGAAAAATAACCTCTTA
ATTTCCCTATTTCTCTTTTATAACCTGTATAATAGATCTAATAACTTCGG
CCTGATACATTACTTGCACTCTGTGTACAGTCTTGACATGCGCTCATCAG
TTCAATGTGTATCCCCTCCCTCCCATAGTCTCTCATGCTCCTTATATGCG
ACACTTGAATTATAACCCTTGTTTTTTCCTTCCTTCCACTTCTCCTTCCT
TCTTCTTTCTTTCCCCCTCCTCTTTTCTCCCCCCCCAATTTACCCCTTTT
TCATACCCTTCATCCCCTGCCCTCCTCTTTCCCTTTTTCTATCCCCCTN
TCGATTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCATCTGAAACAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAATAACCCTGAGATTCCACCGCACACCAGTCAGATTGGCTAAGA
TTAAAAATTCAGGTGATAGCAGATGTTGCTGAGGACGTGGATAAAGAGTA
TCACCCCCCCCTTTTCTGTGCCCCCTCCCTCTTTCTTTTTTCCCTCTGCT
ATTTCTCCTCTCGTCATTTTTATTTTTTTTTCATACTCCTATCACTCTTT
TCCCCTCTTTATTCTTCTTCCCCCTCTGCCCCCTTTCTGCTCTTTCTCCC
TTTTCCCCCCCCTTATTCTACACTTTCCCCAGTTTACCACTCTTTCTCCT
AATTCCTCGCCCTTCTTTTTCTGGTCTTATCGCCTTTCTTTTTCCTCCCC
CCATCATTTTCCTTAATTTCTTTCTTTACTCTTTTCCTCCCGCCCCCTCT
TCTTCTTTTCTCAGAACCTATATACGCTTCTCCCATTAATATCCCCTCTT
GTCCTTTTCCCCCCCCTTCTTTTTCCCCATTTTTATTATTTCTCTCCTAA
TCCTCCGCCGGTCCATCACTTCCCGTTCTTTTCCCACTATCTCCTTATCC
TCGCTCTACTCCTCTATTCCTACTCACCCCTCTTCTCCATCTCTTTCTCC
CTCCCCTTCCTTACCCATTTTTTTATTACATCACTCATCCACCCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_p04.b1 MSMg01no459_p04.b1 CHROMAT_FILE:
MSMg01no459_p04.b1 PHD_FILE: MSMg01no459_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:03 2005
         (369 letters)



>mm_chr10_16313460_16314228
          Length = 769

 Score =  629 bits (325), Expect = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagggagcagcaccttcttttttgggccatgcatgtggacatcactctgcttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaattccagggagcagcaccttcttttttgggccatgcatgtggacatcactctgcttac 270

                                                                       
Query: 65  cttgtcatccagaactctatccttatcacagcactcattggcatgtccttttcttccttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cttgtcatccagaactctatccttatcacagcactcattggcatgtccttttcttccttg 210

                                                                       
Query: 125 ggctttctaggtctacatttccattcttatatatccactagtcaccagggctgcaagccc 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 209 ggctttctaggtctacatttccattcttatacatccactagtcaccagggctgcaagccc 150

                                                                       
Query: 185 tgctctgatatgacttcactgtgactaattatgtatgaaatggcacttttacatgaagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tgctctgatatgacttcactgtgactaattatgtatgaaatggcacttttacatgaagtt 90

                                                                       
Query: 245 ctgagggatagaacctcaatatgtacatttatagggaatgggttggaggagcatttcaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ctgagggatagaacctcaatatgtacatttatagggaatgggttggaggagcatttcaac 30

                                        
Query: 305 acaataggttgaaatgaccctaaaactcc 333
           |||||||||||||||||||||||||||||
Sbjct: 29  acaataggttgaaatgaccctaaaactcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)