BAC Information

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BAC

Clone NameMSMg01-460C10
Chromosome10 (Build37)
Map Location 56,208,319 - 56,208,518
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
Downstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460C10.T7 (MSMg01no460_c10.b1)MSMg01-460C10.TJ (MSMg01no460_c10.g1)
ACCAG545576AG545577
length7031,250
length of high quality
(start - end)
214 (64 - 277)---
definitionCHROMAT_FILE: MSMg01no460_c10.b1 PHD_FILE: MSMg01no460_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:19 2005CHROMAT_FILE: MSMg01no460_c10.g1 PHD_FILE: MSMg01no460_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGTTCCCCCACTTACTCAGCAAGTACTTTTACCATCTAAGCTATCTCAC
CATTTTGTTTACAACAAAATGTGATTAGCTGTTCACTTTGAGGCAGAGGA
GAATCAAACATTTTTTTTTTTTAATGAAAGTGTTATTCAAGTAACAGGTA
TTTTGTATGTAGGCTGCTGACTTTACTTTCAATACTTGTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTGGGTTTTCCAGACAGGGTTTCTATGGATAGCC
CTGGTTTTTTTGGAACTCACTTTGGAAACCAGGCTGCCCTTAACTCAAAA
ATCGGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTACTGCC
ACCACCTGGCTTATTTTCCATACTTGTAAAGAAATGAAAAGTATATTCTG
GGGGGGCTAAAAGAACATTTAAAAGACAGGAAGTAAATTTGGCGGCATAT
AATTTTATCAACTGTCTATGTCATTTCTGACTTATCTTTGTGAAAAATAC
CCATCATAAGATCCTGGGTGCGTATGAACAATGCTGGAAACTACAAAGCA
AGAGCAGAAACCCTTTAAACCTCCTCTGTTTAGCATGGCAACCCACACCT
GTAATCCAGCCCCCGAATAGACATAATTTGGAGGACGCCCGAATTGCTGG
ATG
CCCTCCCTCCCTCTCCCCTGTCTATCCCCGCGCTGTCCCTACTCCAGAGG
TGAGAGGGCAAGTATTTAATTTAATTTTATCGGTCATTTAATAGAGGTGC
CGACAAGAATCTCGGGGAGGAGGTTGCTCGCATATATAGCCACCGTCACA
TAATGAGGCGGGGCTGCGCGTTGCGTTTTGTCAGTTGTTGTTATATCTAC
ACCACGTAACCCAGAGATGCTCTATAGACGTTTGCCAGTGTATGCTCCAC
CCTCCGTATCGTGTTCGTGGGAGAACGCGGTATAATCGCATACCACGGAG
ATACTGAATGCTGTCGCACCCTGTGGCTGTGCGGGTTCACGGCGCCGCGC
ATGTATTATAGTCTAACTGAAATGTGTAGAGGCGAGTATAGGAGCTGCGG
TGTGTGATGCTGCGTTTGTATGTGGGAGGGTGGCGCGTGANACGCCGGGG
TAAGGAGGAGTGAAGGAGAATGAGGATGCTGTACAGATACTGTGACGAGG
CCGANCGCACCCGTTCTGTCGTCNCTGCGGCTGCCTACTCTCTGCATNAC
AACGAGTAGTGGCGACCTANATGGCAGAGTAAGTGTAGGGAATGATGTGA
GAGAGGAGGCCAGATCGGTACTGTATCGATCCACACGGCTAGACAATTCT
TTACACACACGCCGGCGTGGTGACACGGTGTATGACGGCGGTGTGTTGCT
GTTTTATGGATCGAGATCGGAGCGCGCCTAGCTGAGCTCACGTAGCTGGA
TGTGTGTGGCAGATAAATCAGTCATGTGTCAGCGACGAGGCAGCCGGTGG
TTACACTGCTCGACACATGAGGACCACTGGCTTGTATTGTTATATAATAG
AAGATGTCCACGNTAGAACGATAGCGCCGAGCAGCATCGAGTGATTAGGA
CACCATATACACAGTAGCAGAGAGGAGTTCTAGCATGACGTAGCAGCGCT
ACTTACACTACCGGACGAGCGCTCTGTGTCTATGTAGCACGGACGTTGGC
GGTTCCACGGTGACATATGATGATAATACGGGCGATGAGATGCCATACGC
CGCGCTAGTTGTATGTGCCCGCGCGTGTGTGCGCTTGCTGAGAGACCGCG
CGGCGCTATCTGTAGACGCTCGCATCACGTAAGTCAGTGTGTGGTTGGTG
CATGGACATGACCTAGCTGAGCTCAAGGATGTGATACGCCGCGTCTACAT
ACACGCATGCTGTAGACATCTAGGCTCACGCTGACTGCGCGTATTGTCAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_c10.b1 MSMg01no460_c10.b1 CHROMAT_FILE:
MSMg01no460_c10.b1 PHD_FILE: MSMg01no460_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:19 2005
         (214 letters)



>mm_chr10_56208119_56208733
          Length = 615

 Score =  360 bits (186), Expect = e-104
 Identities = 196/200 (98%), Gaps = 4/200 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactcagcaagtacttttaccatctaagctatctcaccattttgtttacaacaaaatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactcagcaagtacttttaccatctaagctatctcaccattttgtttacaacaaaatgtg 260

                                                                       
Query: 61  attagctgttcactttgaggcagaggagaatcaaacattttttttttttaa-tgaaagtg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 attagctgttcactttgaggcagaggagaatcaaacattttttttttttaaatgaaagtg 320

                                                                       
Query: 120 ttattcaagtaacaggtattttgtatgtaggctgctgactttactttcaatacttg-ttt 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttattcaagtaacaggtattttgtatgtaggctgctgactttactttcaatacttggttt 380

                               
Query: 179 ttttttttttttt--ttttt 196
           |||||||||||||  |||||
Sbjct: 381 tttttttttttttggttttt 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 615
Length adjustment: 9
Effective length of query: 205
Effective length of database: 606
Effective search space:   124230
Effective search space used:   124230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)