BAC Information

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BAC

Clone NameMSMg01-461E08
Chromosome10 (Build37)
Map Location 102,813,956 - 102,814,417
singlet/doubletsinglet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
Downstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461E08.T7 (MSMg01no461_e08.b1)MSMg01-461E08.TJ (MSMg01no461_e08.g1)
ACCAG546433AG546434
length797731
length of high quality
(start - end)
134 (70 - 203)462 (81 - 542)
definitionCHROMAT_FILE: MSMg01no461_e08.b1 PHD_FILE: MSMg01no461_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:49 2005CHROMAT_FILE: MSMg01no461_e08.g1 PHD_FILE: MSMg01no461_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCATATTTGCGGCGCTAAACGACTCCTAAATCAAAAGGAGCGCGG
AATTCAAAAGTTTCCAAAGCTGAAGTACCCAAGTGAGGATGCCTCAGTCC
CACTTGGGAGAGAGAAGAAAGCAATCACAAGTGGGAAAAGAGGGAGGGAG
GGACTTGGGAGAGAATGTGTACAGGGTAGGGGGACAGTGATAGGTAGAAG
TNNNNNTGATTCTGTTTTGTTTGTNTTTTTTTTTTCTCTTTTGCCTTTTT
TTTTTGTCCTCCCCGTGTTCTTTTCCTCTGCGCTCTCTTTTTTGCCCCTC
CTCCCCGCCCCCCTTTTGCGTGCTTTTCCGCCGCGGCTCCCGGCGCCCCC
CCTCCCTTTTTTTTTTTTTTCTTCTCCCCCCCTTTGTTTTTCTTCCATTC
TCTTTTTTTCCTTTTTTCTGGCTTTCCCCCCCCCCTCTTTTTTTTCTTTC
CTTTTATTTCTTTATCCTCTCCCCCTTTCCTTTTCCCCTCTTTCATTTTT
TCGCTTCCATTTTTTCTCTTTTTTTTTTCTCTCTTCGTTTCACCCTTCTT
TCCCCCTCCTTTCCTTTCTTTTTTTTTCCCTTTTTATCTCTTTTTTTCTT
CCTTTGTTCTCTGTTCCTTCTTTTTTTTCTTTTTCTTTTTTCTCCTCTCT
CCCCACCTTCCTTCTCTTATTCCTTCCATCATTTTCTGCATTTTTTTTTT
TTTTTTTCTCCTTCCCTTTTTCTCCCTCCCTAACTCCGCCTTTTTTTTGC
CTTTCTTTTTCTTCGCATCCCTTCTCTTTACTTTTTTCTTTTTCTTT
TTCCACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCTAAATCCTTGGTAAT
TTCTTAAGAAATGACAGAAGTCTTGATTCTAAAGTGGTTACTGTATAGCT
TGGGATAAGGACTGGCCAATAGAAGGCTAAACTGTGATTACAAGCGACAC
TTCCTACTTTTATGCCTGAAAAGAACAGCTAGAAATTGAGTTCATAGATC
ACTATACTTGTATGCTAAAATTCTAGTAAAAGTCAAAAGTATAAGGTTAT
GAGCCTCCAAGGTGAAAGTATTTATGTATCTAAAGAGAACCACACAACAA
GCCATAGAAACAGACGTTCCTCTGCTTGGGAACCTGTAGAGCTTTATTCT
CTGGGCCCCATTATCTCGTTAGTCATTTATCCTTAAGATAAGCTGCCAAA
TGTACAAAGTGCCCCCTTCAGTTCTAAAACAATGAAACATGAGATAGGAT
TATAGGACTCTTGAGTTAGTGACCAAGTTGGGCAGAAACTTATAGGCCCA
CACTTGGGAATTTATGATAAAAAGCGATGAATTTTGATGCAAGTATGTAA
CCCCCACCATGGCCTCCTTCACGAAAGGTTTGAATACGGATGGTTTTTTA
AATCTCCTATATTGTATTGCCTCGCCCTTTAAGAGGGCCTCTATTTTTCA
TTTTCCCCCTTAACGGTGTTTTTCTGCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_e08.g1 MSMg01no461_e08.g1 CHROMAT_FILE:
MSMg01no461_e08.g1 PHD_FILE: MSMg01no461_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:49 2005
         (462 letters)



>mm_chr10_102813756_102814617
          Length = 862

 Score =  847 bits (438), Expect = 0.0
 Identities = 456/462 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtctaaatccttggtaatttcttaagaaatgacagaagtcttgattctaaagtggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aggtctaaatccttggtaatttcttaagaaatgacagaagtcttgattctaaagtggtta 603

                                                                       
Query: 61  ctgtatagcttgggataaggactggccaatagaaggctaaactgtgattacaagcgacac 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 602 ctgtatagcttgggataaggactgaccaatagaaggctaaactgtgattacaagcgacac 543

                                                                       
Query: 121 ttcctacttttatgcctgaaaagaacagctagaaattgagttcatagatcactatacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 542 ttcctacttttatgcctgaaaagaacagctagaaattgagttcatagatcattatacttg 483

                                                                       
Query: 181 tatgctaaaattctagtaaaagtcaaaagtataaggttatgagcctccaaggtgaaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tatgctaaaattctagtaaaagtcaaaagtataaggttatgagcctccaaggtgaaagta 423

                                                                       
Query: 241 tttatgtatctaaagagaaccacacaacaagccatagaaacagacgttcctctgcttggg 300
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cccatgtatctaaagagaaccacacaacaagccatagaaacagacgttcctctgcttggg 363

                                                                       
Query: 301 aacctgtagagctttattctctgggccccattatctcgttagtcatttatccttaagata 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 362 aacctgtagagctttattctctgggccccatcatctcgttagtcatttatccttaagata 303

                                                                       
Query: 361 agctgccaaatgtacaaagtgcccccttcagttctaaaacaatgaaacatgagataggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agctgccaaatgtacaaagtgcccccttcagttctaaaacaatgaaacatgagataggat 243

                                                     
Query: 421 tataggactcttgagttagtgaccaagttgggcagaaactta 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tataggactcttgagttagtgaccaagttgggcagaaactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)