BAC Information

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BAC

Clone NameMSMg01-461I02
Chromosome10 (Build37)
Map Location 103,707,189 - 103,707,654
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461I02.T7 (MSMg01no461_i02.b1)MSMg01-461I02.TJ (MSMg01no461_i02.g1)
ACCAG546612AG546613
length723736
length of high quality
(start - end)
419 (52 - 470)467 (83 - 549)
definitionCHROMAT_FILE: MSMg01no461_i02.b1 PHD_FILE: MSMg01no461_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:08 2005CHROMAT_FILE: MSMg01no461_i02.g1 PHD_FILE: MSMg01no461_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTAGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCTTTTCTGAGCCCCATTTTTTAATGGGTTTATT
TGATTTTCTGAACTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTCTTTGTATTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTAGGTCCCATTTGTCAATTCTGAATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCCCTATGCACATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTAGCTTTATGTGAAGTTC
TTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGA
TTCGCATTCTTCTACATGATAACTACCAGTTGTGTCAGCACCAATTGTTG
AAAATGCTGTCTTTCTTCCCCTGGATGGTTTTAGCTCCCTTTGCCGAAGA
TCAAGTGACCATACGTGCGTGGCCTCATTTCCAGGCCTTTATTTCCACTA
CCATTGGTTCTTTCGGCTTGTCCCTCATTCTCATTTTTCCCTTATTTCCT
TCCATTTGTCTCGGCCTTTCCCCCCTTTTTTTCCCGTCTTTTTTTCTCCC
CCTCCACCCTCTTTTTTTCCCTC
TTCTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTTTACAGGGAGAGAT
AGAATGTTGAAGGCAAGAAAAGGAATAAGAAAATATCTACTTTATTATTG
CCCATCACAAATAGCGGTCTGTGTATGGGCCAGAAATCAAAATGATGTGT
GTTTGATGACAAGTCCTGTCATTACTCACATGAGATGCTATTGTATTTAG
CCTTGTGAAAGGGAACTCTAGACCATGCATGGGAATATTTTCTGCTTACT
TAAAAAAACGATGAATGATACTTAATTGCCTATTCACATTTTGTGGAATA
GTGAGCACAGAATTTGATTTGGACAAAAATTTCAACAAATAGACATCTGG
TTTTCTTCAGTATGGAAAATAAATTTCATTTCTCTATTTCTTTTCTTCAT
CTTTCCTTAAATAGTAAAGCATTGCAAACAGATTTGTTAATGAAAACTTG
CAATGATTTATTGTTGCAAAATACTTATTTTTAAGTTTTTATTTACCTTC
CAAGTAATTGCAGAACACGTATGCAATTTTATGTATTCAGATCATAAAAC
TTACAATATATTTTATAACTATTATTCTCCCGCATTTTATTTTTAGCACA
TTATTTTTTATTAAGCACTATGTATTGTCCTCCCCTTATTTGCATAACCT
ATGGCATCCTTATTACTTTCTGTTTTACCGCACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_i02.g1 MSMg01no461_i02.g1 CHROMAT_FILE:
MSMg01no461_i02.g1 PHD_FILE: MSMg01no461_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:08 2005
         (467 letters)



>mm_chr10_103706989_103707857
          Length = 869

 Score =  843 bits (436), Expect = 0.0
 Identities = 458/466 (98%), Gaps = 2/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtttacagggagagatagaatgttgaaggcaagaaaaggaataagaaaatatctactt 60
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 666 atgtttacagggaaagatagaatgttgaaggcaagaaaaggagtaagaaaatatctactt 607

                                                                       
Query: 61  tattattgcccatcacaaatagcggtctgtgtatgggccagaaatcaaaatgatgtgtgt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tattattgcccatcataaatagcggtctgtgtatgggccagaaatcaaaatgatgtgtgt 547

                                                                       
Query: 121 ttgatgacaagtcctgtcattactcacatgagatgctattgtatttagccttgtgaaagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 546 ttgatgacaagtcctgtcattactcacatgagatgctattgtatttagccttatgaaagg 487

                                                                       
Query: 181 gaactctagaccatgcatgggaatattttctgcttactt--aaaaaaacgatgaatgata 238
           |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||
Sbjct: 486 gaactctagaccatgcatgggaatattttctgcttacttaaaaaaaaaggatgaatgata 427

                                                                       
Query: 239 cttaattgcctattcacattttgtggaatagtgagcacagaatttgatttggacaaaaat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cttaattgcctattcacattttgtggaatagtgagcacagaatttgatttggacaaaaat 367

                                                                       
Query: 299 ttcaacaaatagacatctggttttcttcagtatggaaaataaatttcatttctctatttc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcaacaaatagacatctggttttcttcagtatggaaaataaatttcatttctctatttc 307

                                                                       
Query: 359 ttttcttcatctttccttaaatagtaaagcattgcaaacagatttgttaatgaaaacttg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttttcttcatctttccttaaatagtaaagcattgcaaacagatttgttaatgaaaacttg 247

                                                         
Query: 419 caatgatttattgttgcaaaatacttatttttaagtttttatttac 464
           |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 246 caatgatttattgttgtaaaatacttatttttaagtttttatttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 869
Length adjustment: 10
Effective length of query: 457
Effective length of database: 859
Effective search space:   392563
Effective search space used:   392563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)