BAC Information

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BAC

Clone NameMSMg01-461K01
Chromosome10 (Build37)
Map Location 13,047,355 - 13,047,489
singlet/doubletsinglet
Overlap genenone
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2
Downstream geneLOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461K01.T7 (MSMg01no461_k01.b1)MSMg01-461K01.TJ (MSMg01no461_k01.g1)
ACCAG546706AG546707
length779807
length of high quality
(start - end)
135 (151 - 285)49 (76 - 124)
definitionCHROMAT_FILE: MSMg01no461_k01.b1 PHD_FILE: MSMg01no461_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:18 2005CHROMAT_FILE: MSMg01no461_k01.g1 PHD_FILE: MSMg01no461_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAATCTAAATTTGCGGCTGTTATAGGTATTCCTATAGTGCAGAAGAGG
CGCGGAATTCTATTTATTTTCCTCTCTCCCCATGAGAACCTACCTCCAAG
TTCTGGAGTGGCAGTGGCTATAGAGATCTGGTAGATCTGAGGAAGATGGA
GACCCAGGATTAGAACTTATGGTGTCTGAGTTCTTCCCTATATATGCTCA
TAACTCTCCTCCAGTCACCAAATTTTATTTCTGCAAAGTGGACCCTGAGC
TTCTAGGAGAGGAGTTTGTCATAGTCTAGGTTTGTAAGGTTCAGGTTGAT
GTCTGCTTTAATTTACCATAGTGTTTTTTTGTCTATGAAAAGTACGGTTG
TTACTTTGGATACCCCTTATGGCTGAGTTTAATATCGTCCATATCAGATA
AGTTCGGTAATTCTGAGTGATTGTCCATAGTGTTTGATTTTCTCCTAATT
ACGAGTGTCCGCTTTTTTCTCTATTCTGTTTTCCATTTTTCCATTTCTAT
CTTTCTCTTCTTTTATTTATTTCCCCCTTTTCCCTCCTTTTTGTTCTCTC
CCTTCCTCCTTTTTTCCGCTTTTTTCTCTTACCCTTCCCTTTCTTCCTTT
TTCTCTTTTTCTTTTCTTTTTTTTTATTCTTTCTCTCCTCTTTTTTATTT
TCCCCCTCTTTTCTTAATTTCAACGTGTTACATACTTTCTTATTTTTCAA
CCTCTTCCTTTTAACTTTACCTCTTCTCATTTTTTCACCACCTTATCTCT
TTTTCTTTTCTTTCTGCTCCTTTTCACAN
CCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGAGCAATCAAATGGGTGCTTTAAGCGGTGTTGA
AGAGGTAGTGGTTGGGGAGAAATGATTTGTTTTATCACGCCCTACCTCAC
GCCCCCACCACTATTCAGTGTACCTGATCCAACACCCACCCTCCCCTGCC
CTCGTCCCTTCTCCCTTCCCCTGTCCCGACTCTATCTACTTTCATTGACC
TAATCATCTCCGCCCGTCTCACCCCACCCTTTCTATCCCCTTCCCCCCTC
TCTTATTCCCCCCTTTCCCCTTTTCTTTTTTTTCCCTCTTCACCTACTTT
CCTTTCCCCTACTCTCCTTTTTTCCCTCCCCCTTTCCCCCCTTCATTCTC
TCCTTTTTCTTTTTTCCTCCTCTCCTCCCTCTATTCCTCCTTTCCCCTTC
TCTCTCCCTTTCTCTCCCTATTTCCCCTTCCCTCCCCTTTTCCTCCTCCC
TCCCCTCACCTCTTTCTACACCTCCCCTCCCCTCCTCTTACCACTTCTTC
TTCCCTTTTCACTCCCCTCTCCCCCGCCCTTCCCCTTTCTCCCTCTCCTC
CTACTATCCCCTATCCCCACCCATCTTCCAGTTTTTCTATCTTCCACCCT
TTCCCCTCTCTCTTTTCCCTTATCTCTACCTCTTTTTCCCCATCCTTAAT
ACCCCCCTGCCCTCCGCTACCCTCTTTCCTTTTTCTTTTATCTCCTTCCC
TCTCCTTCCACTCCCCTTTTTTCTCTCCCCTCCCCCCTTTTTCCACCCCT
ACCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_k01.b1 MSMg01no461_k01.b1 CHROMAT_FILE:
MSMg01no461_k01.b1 PHD_FILE: MSMg01no461_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:18 2005
         (135 letters)



>mm_chr10_13047155_13047689
          Length = 535

 Score =  246 bits (127), Expect = 5e-70
 Identities = 133/135 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacccaggattagaacttatggtgtctgagttcttccctatatatgctcataactctcct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 335 gacccaggattagaacttatggtgtctgagttcttccctatatatgctcaaaactctcct 276

                                                                       
Query: 61  ccagtcaccaaattttatttctgcaaagtggaccctgagcttctaggagaggagtttgtc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccagtcaccaaattgtatttctgcaaagtggaccctgagcttctaggagaggagtttgtc 216

                          
Query: 121 atagtctaggtttgt 135
           |||||||||||||||
Sbjct: 215 atagtctaggtttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)