BAC Information

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BAC

Clone NameMSMg01-461M07
Chromosome10 (Build37)
Map Location 34,824,801 - 34,824,987
singlet/doubletsinglet
Overlap genenone
Upstream geneA630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585, LOC667860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461M07.T7 (MSMg01no461_m07.b1)MSMg01-461M07.TJ (MSMg01no461_m07.g1)
ACCAG546814AG546815
length745751
length of high quality
(start - end)
187 (132 - 318)439 (78 - 516)
definitionCHROMAT_FILE: MSMg01no461_m07.b1 PHD_FILE: MSMg01no461_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:30 2005CHROMAT_FILE: MSMg01no461_m07.g1 PHD_FILE: MSMg01no461_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCG
CGGAATTCAACTTAATCGCGATAGAAAAGCTCTATAGAAGCATGCTGTTC
TCTGACCAATGTCTCTGTGTTTTACGCAAAATTAAAGAAAAAAAAGCTGG
AATAGACAATTTCCATTTCTATGAGTTCTGTGTCGTATGTCATCTGGTTT
AAACAAAAGCACTCTATCTTCTTCATAGAGGTAAAAATGCAAATGCTAGG
TTGATATTCAACTCATCACTTATTAAAGAGGCTCCAGCAAGTTTCAAATA
AAATTTTACTTTTGAGGGTTTTTTATTATGTTCTAAGGCAAAGAAACCTC
AGTTACTTCCTGTTACTTAACTTTTACATCTATAAAAATGTGATGATAAT
ATACTAACTTCATGGATTTATCTCGCTTGTCTTAAGGATGACATTTATTT
AGCTGTACCTTATATTATCTCAATATATTTTAAATTTTGCCCATCTATAT
CTTTACAATGTATTTCTTATACTTTTAAACCTTTCACGTATCACTTGCTC
GTTTTAACGTTTTACTCTCACGTCCCGTTACTGCTTCTCTTCTTAGCTTA
CTATCTGTTTCCTTTCCCTTCCTTCTTAATTTCCCCGACTGTCTTCTTCC
CTCTTTTGATTTTTCCTTCCAACTGACCCTTCCTTTATGTTTCCTCTTTC
ATTTTTCTCCCCTTTCTCTTGCTTTTTCCTTTTCCACCTTTCACC
TCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACAG
GGTACTCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTTGAACTTTCTA
ACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAA
GGTAAGTCTGGTCTTGAACTTTCTAATGAAATTCAAGACAGTCTATCAGA
AGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTTTC
TAGTGTTAGGAGCCCTTTTGTTTCTTTTCACATGTTATCAAGTGGTTAAG
GCAGGGCTGAATATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTATA
GCAGGGAGAGAGAGTAGGACCAAAGAGGAAATATGGTTCACAAAATAAGT
ATACAGGCCTTTCCACAGGTCTTGAACCTGAGGAAAAGTTTAGGTCAGGT
AAGAATACCTGGGTAGAGATTGGAAGGAAGGAAAAGAATAAAGTTTAGAA
TAAAGATCTATCAGCTGCAGGCCTCTAGGAGAAGGAGCCTATACTCATCA
CTAGGTGAGCTCAAGGAGCCCAGTTCTTAACATTTTCTGAATCAGATGAA
ATGGTCTATTATGGTCCTTGGAAGGTGCTCTCCTCCCATAAGGTTGAAGC
CACCCGGTATATCTTATCATATAACCCCTCTTTTACAACTTCTCTTTGTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_m07.b1 MSMg01no461_m07.b1 CHROMAT_FILE:
MSMg01no461_m07.b1 PHD_FILE: MSMg01no461_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:30 2005
         (187 letters)



>mm_chr10_34824601_34825187
          Length = 587

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaagaaaaaaaagctggaatagacaatttccatttctatgagttctgtgtcgtatgtc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttaaagaaaaaaaaactggaatagacaatttccatttctatgagttctgtgtcgtatgtc 328

                                                                       
Query: 61  atctggtttaaacaaaagcactctatcttcttcatagaggtaaaaatgcaaatgctaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atctggtttaaacaaaagcactctatcttcttcatagaggtaaaaatgcaaatgctaggt 268

                                                                       
Query: 121 tgatattcaactcatcacttattaaagaggctccagcaagtttcaaataaaattttactt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaaattcaactcatcacttattaaagaggctccagcaagtttcaaataaaattttactt 208

                  
Query: 181 ttgaggg 187
           |||||||
Sbjct: 207 ttgaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)