Query= MSMg01no461_o10.b1 MSMg01no461_o10.b1 CHROMAT_FILE:
MSMg01no461_o10.b1 PHD_FILE: MSMg01no461_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:41 2005
(504 letters)
>mm_chr10_26568794_26569709
Length = 916
Score = 835 bits (432), Expect = 0.0
Identities = 488/512 (95%), Gaps = 14/512 (2%)
Strand = Plus / Plus
Query: 6 gaattcctactttttctgtcttcacttgattccgttatctatttagctttcaggca---- 61
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctactttttttgttttcacttgattccgttatctatttagctttcaggcacaca 265
Query: 62 -a---tctctc-ttttttctttgaaaataatgtgctttaaaaattcttgaatatcaatat 116
| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 cactctctctctttttttctttgaaaataatgtgctttaaaaattcttgaatatctatat 325
Query: 117 tatctgatgcatacatttgagaaaaaaaaa-agaaactttaatttgaaattccctgttac 175
||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 326 tatctgatgcacacatttgagaaaaaaaaatagaaactttaatttgaaataccctgttac 385
Query: 176 ---ttttttttttcttcactaccttgccatatgcctcattagctacatggaactgagaaa 232
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 tttttttttttttcttcactaccttgccatatgtctcattagctacatggaactgagaaa 445
Query: 233 acaaacccttctggaaataggtgttgggctccaagatagtcttgaactcaagccaagaaa 292
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 446 acaaacccttctggaaataggtgttgggctccaagatagccttgaactcaagccaagaaa 505
Query: 293 ccctgtctccatgcaggcttgggacaccaacctctgcgctcccccgctgggacgtgttat 352
||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct: 506 ccctgcctccatgcaggcttgggacaccaacctctgcg-tcctccgctgggatgtgttat 564
Query: 353 ttctccatgcttgctcacctctaggaggacgacgggacagccttccctagttaatatgca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctccatgcttgctcacctctaggaggacgacgggacagccttccctagttaatatgca 624
Query: 413 ggaacttgtagaggttaattacatgtgaaacaattttagaatttttaattaagtatatat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaacttgtagaggttaattacatgtgaaacaattttagaatttttaattaagtatatat 684
Query: 473 gaaattgacccaaaatttgctatcactatggc 504
||||||||||||||||||||||||||||||||
Sbjct: 685 gaaattgacccaaaatttgctatcactatggc 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 916
Length adjustment: 10
Effective length of query: 494
Effective length of database: 906
Effective search space: 447564
Effective search space used: 447564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_o10.g1 MSMg01no461_o10.g1 CHROMAT_FILE:
MSMg01no461_o10.g1 PHD_FILE: MSMg01no461_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:41 2005
(554 letters)
>mm_chr10_26614843_26615796
Length = 954
Score = 1017 bits (526), Expect = 0.0
Identities = 549/560 (98%), Gaps = 6/560 (1%)
Strand = Plus / Minus
Query: 1 agtctcacatacgcctaacatacgaccagtagccacatttccctactcctgctagctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agtctcacatacgcctaacatacgaccagtagccacatttccctactcctgctagctctt 669
Query: 61 gttctaaatttctttttcaactggccctttccccctactcaggcttattttaaaagctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gttctaaatttctttttcaactggccctttccccctactcaggcttattttaaaagctac 609
Query: 121 ctgcgtgtcatttcataccagcagcagcacataatcagaaccaacacaatgaactcaaag 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctgtgtgtcatttcataccagcagcagcacataatcagaaccaacacaatgaactcaaag 549
Query: 181 atttgaaatagattcttcctagaggctacaatctgatgccgtttgagaaaatcagtaaga 240
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 548 atttggaatagattcttcctagaggctacaatctgatgccgtttcagaaaatcagtaaga 489
Query: 241 actggtaggttttaaagatagttggtcttcaatcccaactcttttccctctacagaagat 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 actggtaggttttaaagagagttggtcttcaatcccaactcttttccctctacagaagat 429
Query: 301 taaaattgctgtttaaaatattctttccttatctgaaataagacaatataccctaactac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taaaattgctgtttaaaatattctttccttatctgaaataagacaatataccctaactac 369
Query: 361 ggaaacaggattttaaaataagataatgtttacaaaatcattagcaatgtgtcttacacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggaaacaggattttaaaataagataatgtttacaaaatcattagcaatgtgtcttacacc 309
Query: 421 gggtaaatgtttacaaagtttgggagttggagaatttagctcagggatacagtagtcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggtaaatgtttacaaagtttgggagttggagaatttagctcagggatacagtagtcagc 249
Query: 481 gctgggttctttccctgaaattagaagaaaagaaaaag------aaaaaaaaaaccaggc 534
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 248 gctgggttctttccctgaaattagaagaaaagaaaaagaaaaaaaaaaaaaaaaccagcc 189
Query: 535 ctaattctcacccatcacaa 554
||||||||||||||||||||
Sbjct: 188 ctaattctcacccatcacaa 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
