BAC Information

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BAC

Clone NameMSMg01-462C24
Chromosome10 (Build37)
Map Location 72,879,483 - 73,010,276
singlet/doubletdoublet
Overlap geneLOC432471, LOC100039981
Upstream geneZwint, LOC544705
Downstream geneLOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462C24.T7 (MSMg01no462_c24.b1)MSMg01-462C24.TJ (MSMg01no462_c24.g1)
ACCAG547134AG547135
length766779
length of high quality
(start - end)		313 (56 - 368)337 (85 - 421)
definitionCHROMAT_FILE: MSMg01no462_c24.b1 PHD_FILE: MSMg01no462_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:06 2005CHROMAT_FILE: MSMg01no462_c24.g1 PHD_FILE: MSMg01no462_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,009,970 - 73,010,276)(72,879,483 - 72,879,819)
sequence
TCCCTTCTTTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACTCTCCCTGGGCATCCCTAGTAAGCATAAGATGT
CTTATTTAACTTACTTGTCTGGTAATATATCAAGGGTGAAACTCTCTGAG
GAATGATTTTCCCACTGTACTTAGCTCATTGTAATTACCATCATAACTTG
AAGTGCTTTCAACTCATTTTGTACAAAACACTATTTCAAAATATTTGCAC
AGTATAATGAAAATATATGCCTAGAGGAAATCTGTTTATTTCTCATTGCT
TGCCTAGCAATAGGATGGGGTGAATTTGAGAGTGAGTTGGATTGTAGTTG
NNCATTCNCAATCCTATTGTTTCACTATACAGCAAGGTCAGATTCATTGC
CGGNCACTCTCCCAAGNACACCCTGACATACAACTAACATATAATATAAA
ATAAAAATTCTTCATGGACACATCTTATGCGTCAAACTGTGCAGGTTTCT
CAACCCCTCCTTTCTGATTATCGCGAAGTACATATCCTTCCTTTCTCTTC
TCCTTCTTCCCTCTCTCCTCTATCTCTTTTTCTTCTTTTCCTCCTTTTCT
TTTCTCCTCCTTTTGTACTTTTTGTCTTTCCCGCTTTTCTTTTCTGCTGG
GCTCTCTTTCTCTGTGTTCTTCTTTTTATCTCCCTCCCTGACTCTTTTTT
TCCCCATCTATCCTTCTTGAGATATTTCCTCTCAACTTAATTATTCTCGA
CATTTTCTTATATTCA

NCCAAATTCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTTATTAAATCTG
AAAAAGATCTGAATGGATTTTGGAAACTAGATTCTAAGTTATTTAGCAAA
GAATCTGAGGCTGAAGATCTGTTCAGAGTGTTAAAGGGAGTGAAGGATAT
TTAAAAACTGAACTAAATTTTATAGGATATAATGTGATATGTTGTGGGAG
GATACAGTTGTGAGTCAGAAAGTCAATCCAAGGAATCAGAGACGGGAGAA
ATATAAAACATCCTCTTTCAATGTCCTTACCCACCTCTCTTCATGCTGTC
TTCTGATTCTTGGTTGGGATTATTGTTTGAAAATACAACACAAAAAAGAT
AATATTAATAAAAATATTCACCATCACAGATGTGCTCTGAGATATTCACG
GCAGGCAGGCAGCTTGAGAATTTTGAAGGCATTAACTTCTATTTAACCAC
CCTTATAGAGGAATACCACTGACTGCCTCGGTTTTCACCTCCTGATTGTT
GCTTTATTTATTTCATTTCCCCCGGCCCTCCGGTAGATTCTTAACCTCTT
CCACTTCTGCGTTTTTCTTTCCCGGTCTCTCTTTTCTCCCTCCCCTTTAC
TTCCCCCTTTCTCGTCTACCTCCTTTCCTCCTTTCTTCTGTTGCGCTCCT
CTTTCATCTTCCTTCCTTCTCTTTTTCTCCTCCTTTCTTTTTTCCCCCTT
TTCTTTCGTCCTCTCCTCTCCCACTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_c24.b1 MSMg01no462_c24.b1 CHROMAT_FILE:
MSMg01no462_c24.b1 PHD_FILE: MSMg01no462_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:06 2005
         (313 letters)



>mm_chr10_73009766_73010478
          Length = 713

 Score =  576 bits (298), Expect = e-169
 Identities = 304/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctccctgggcatccctagtaagcataagatgtcttatttaacttacttgtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcactctccctgggcatccctagtaagcataagatgtcttatttaacttacttgtc 452

                                                                       
Query: 65  tggtaatatatcaagggtgaaactctctgaggaatgattttcccactgtacttagctcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tggtaatatatcaagggtgaaactctctgaggaatgattttcccactgtacttagctcat 392

                                                                       
Query: 125 tgtaattaccatcataacttgaagtgctttcaactcattttgtacaaaacactatttcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgtaattaccatcataacttgaagtgctttcaactcattttgtacaaaacactatttcaa 332

                                                                       
Query: 185 aatatttgcacagtataatgaaaatatatgcctagaggaaatctgtttatttctcattgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatatttgcacagtataatgaaaatatatgcctagaggaaatctgtttatttctcattgc 272

                                                                       
Query: 245 ttgcctagcaataggatggggtgaatttgagagtgagttggattgtagttgnncattcnc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |
Sbjct: 271 ttgcctagcaataggatggggtgaatttgagagtgagttggattgtagttggtcattcac 212

                  
Query: 305 aatccta 311
           |||||||
Sbjct: 211 aatccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no462_c24.g1 MSMg01no462_c24.g1 CHROMAT_FILE:
MSMg01no462_c24.g1 PHD_FILE: MSMg01no462_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:06 2005
         (337 letters)



>mm_chr10_72879283_72880019
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttattaaatctgaaaaagatctgaatggattttggaaactagattctaagttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggttattaaatctgaaaaagatctgaatggattttggaaactagattctaagttattt 260

                                                                       
Query: 61  agcaaagaatctgaggctgaagatctgttcagagtgttaaagggagtgaaggatatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaagaatctgaggctgaagatctgttcagagtgttaaagggagtgaaggatatttaa 320

                                                                       
Query: 121 aaactgaactaaattttataggatataatgtgatatgttgtgggaggatacagttgtgag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactgagctaaattttataggatataatgtgatatgttgtgggaggatacagttgtgag 380

                                                                       
Query: 181 tcagaaagtcaatccaaggaatcagagacgggagaaatataaaacatcctctttcaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagaaagtcaatccaaggaatcagagacgggagaaatataaaacatcctctttcaatgt 440

                                                                       
Query: 241 ccttacccacctctcttcatgctgtcttctgattcttggttgggattattgtttgaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttacccacctctcttcatgctgtcttctgattcttggttgggattattgtttgaaaat 500

                                                
Query: 301 acaacacaaaaaagataatattaataaaaatattcac 337
           |||| | ||||||||||||||||||||||||||||||
Sbjct: 501 acaatataaaaaagataatattaataaaaatattcac 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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