BAC Information

Click to search

BAC

Clone NameMSMg01-462G12
Chromosome10 (Build37)
Map Location 32,343,353 - 32,343,620
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneLOC667752, LOC100040638
Downstream geneEG667761, Trdn, A330019N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462G12.T7 (MSMg01no462_g12.b1)MSMg01-462G12.TJ (MSMg01no462_g12.g1)
ACCAG547300AG547301
length7621,424
length of high quality
(start - end)
256 (323 - 578)---
definitionCHROMAT_FILE: MSMg01no462_g12.b1 PHD_FILE: MSMg01no462_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:24 2005CHROMAT_FILE: MSMg01no462_g12.g1 PHD_FILE: MSMg01no462_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGAATCCGCG
GAATTCTGTGGTTGCATCTTGTGTATTCTGTATGTGTTTTTGGTATTTTG
TTTTGTGCTTGTTTTTGCTAATATCCACTTATTAGTGAGTATATACCATA
CACGTGCTTTTGGGTCTGAGTTACTTCTTAATTCAAAGTAGGATGGGGTA
TGTAAAAGAATCCTTCAGACTGACCATTTGAACAATGTTTAAAGATGCTC
TAGTTGATATAGTGTGACTCAGTTTTGTTACATTGGTCCTACCATAGGGT
TCAGAAAGGCCTGATACTGGTATTACTTCTCTATTAGTAACAGGTCTTTA
TTATTTGTAAATTAATCAGTCAAAAATTTAATTTATCTCTCCTTAGTTAA
TTCTAGCATCATTGCTTACATGAAGTATAATAAATAGATAAATAAATAAA
TAAATAAAAACCATTTTACTGTTGTGAATAGAAACCATGACCAAGTCAAT
TTTTCTTAGAAAAATCATTAAGTTGAGGAGTTACCTGCAATTTCTGAGGC
TTTGTCAATTATCATTATGGTTAGGAATAAGATGGCATGTAGGCAGGCAT
GGTGCTGGCATGGTAAATGAGAGCTGCATCCTGATCTGCTTGTTAAAGAG
ATTTACTTTGGATGGCACAGGCTTTAACCCACCCCCGTGGCACACTTCCC
TAACAGAAAGCCATAACCCTTTAATCCCTATAACCCCTTCTAAGAGGTTG
ACTCCCTTATGG
TGAGGACGCGTACGGGGGAGCGAGCGAGACAGGGACACAAACAGGGCGCC
TCTGACACACAGTTACCCGTCCTACGATCACGACGGACGGATGACTCGCG
CAATAATAACGCCCACACGACACTCACCACAGCCAGGTCACTAATATATG
CATTACCTACGCCCAGATGCAAGGGCAATATGTAGAGGAGTGCCAACCGC
GAAAGATATAAATAAGTCTGCTGTTTAACTGAGGCTCTCCTCTGTCCTAT
CCCTGCATTGTCCTCAGTGTACGTTGCTATTACGCATCTGTGCATGTATT
TGTCTGTATGTTAGACTAATTATGATAATAAATCACTATAACCAAACTAC
TCCTCTATCTTATATTCTTACTCACGGGCTGGGACGCGTCTCGCGCGGAT
ACCCGAGTAAGGAGTAGTAGTGTTAGGGAGCAGGAGAGCGGACTGCTTCA
ACGCTGCCAAGGATAAGTCAGCCTAGCGGAGGTCTCATATGCGACGCCCT
CAGGGTACACGACATTGATGAATTAGANTACAGACATATATCACAATGGT
TCTTGAACCCAGTAATGACCATCGACCTAACCCTAACACGAGTATATTAC
AAACAACCTACATATGGCACGTTCCGTCACCTTACTCGAATATAGACCCC
CACCCCTATATGCGCATCGACTACAATAGCGTATAGACATACATCCCACA
CCCTGACTATATATCTCCACCCCTATTTTTCTTCTACCGCGCCTTGTCAC
GCGCAGTATACCATGTATACGGGCTGCGCGTGCATCATTCCGACTAGCGC
ATACCGGATGCGTGCATCATGATCTTCATACTGCCCGTCTGTATGCGCCT
ATATATGTGCGATGACGCGCCTATGAGCTCACGAAATAGTATGCGGTGCA
CATGCTATTTACTCCGTGTTGCATTATGNTAACGGTGTACTGTGCCTGGA
CTGCTGCAATGTCTCCAATGCGTTACGTTCTCTCATTTTAGCGATACTGT
TACTTCAGACAGACACACTGTGATTGTGCCACGTTAGATATCCAGCGTCT
GTATCCGTATCGTCGTTCTGCACGAGGATATCGGGTCGTGTCCATACTCG
CTCATTTAGTTGACCATGTGCCGCAGATGGTGCCGTTCGTCCACAGTGTA
AGCAGACCGTATATCTATCTGCGTGTATAGCTANTTGCAGTCGCGCTCTG
TGTAGTCAGCCGTCAAGTATGCGACACTCGAGAGTATGATCTTTCCATCG
TGGCGATGTGTATTATGACCGAGATCCACGTGCGTGATGACATGNTGATT
CAGATGATACACTCTGCTACACAGCGTCTTGCTATAGCATACACTTATCA
CTAATAACTGTCTCGCACCAAGCATTATNTAATGCGTGATCCCTCTTCAC
TGCATCTACTAACACGTNCGACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_g12.b1 MSMg01no462_g12.b1 CHROMAT_FILE:
MSMg01no462_g12.b1 PHD_FILE: MSMg01no462_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:24 2005
         (256 letters)



>mm_chr10_32343315_32343970
          Length = 656

 Score =  398 bits (206), Expect = e-115
 Identities = 247/272 (90%), Gaps = 20/272 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacttctctattagtaacaggtctttattatttgtaaattaatcagtcaaaaa----tt 56
           ||||||||||||||||| |||||||||||||||||||||||||||||||    |    ||
Sbjct: 306 ttacttctctattagtagcaggtctttattatttgtaaattaatcagtc----agggctt 251

                                                                       
Query: 57  taatttatctctccttagttaattctagcatcattgcttacatgaagtat---------- 106
           |||||||||| |||||||||||||||||||||||||||||||||||||||          
Sbjct: 250 taatttatctttccttagttaattctagcatcattgcttacatgaagtataataaataaa 191

                                                                       
Query: 107 --aataaatagataaataaataaataaataaaaaccattttactgttgtgaatagaaacc 164
             |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 190 taaataaataaataaataaataaataaataaaaactgttttactgttgtgaatagaaacc 131

                                                                       
Query: 165 atgaccaagtcaatttttcttagaaaaatcattaagttgaggagttacctgcaatttctg 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atgaccaagtcaatttttcttagaaaaatcattaagttgaggagttacctgcaatttctg 71

                                           
Query: 225 aggctttgtcaattatcattatggttaggaat 256
           ||||||||||||||||||||||||||||||||
Sbjct: 70  aggctttgtcaattatcattatggttaggaat 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)