Query= MSMg01no462_i19.b1 MSMg01no462_i19.b1 CHROMAT_FILE:
MSMg01no462_i19.b1 PHD_FILE: MSMg01no462_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:36 2005
(517 letters)
>mm_chr10_24759697_24760618
Length = 922
Score = 915 bits (473), Expect = 0.0
Identities = 498/509 (97%), Gaps = 5/509 (0%)
Strand = Plus / Plus
Query: 1 tgttctctgttgggactccacatggcacagaaagccatggggcatggacttaggtgacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttctctgttgggactccacatggcacagaaagccatggggcatggacttaggtgacta 260
Query: 61 ttgtttatggacaacctggtgtttctatcctgaaatgagtagaggtttccttaaagctat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ttgtttatggacaacctggtgtttctatcctgaaatgagtagaggtttccttaaagcttt 320
Query: 121 gtttatttagtgtgtcaccattagttgcattaaaaccaacaatatgtaatgggatggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttatttagtgtgtcaccattagttgcattaaaaccaacaatatgtaatgggatggcag 380
Query: 181 tgcctaacacacatttttagaggagattaaggaagcttgcta-----accggaccatcca 235
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct: 381 tgcctaacacacatttttagaggagatcaaggaagcttgctagccggaccggaccaccca 440
Query: 236 acactggacctgcttctccaaatctgtctgtctcttctcaggtttgcttggctatctcaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactggacctgcttctccaaatctgtctgtctcttctcaggtttgcttggctatctcaa 500
Query: 296 acatcaagctctttggctcctggtttctcatccttggtgtttctgatttgggtacttaag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatcaagctctttggctcctggtttctcatccttggtgtttctgatttgggtacttaag 560
Query: 356 ctctaagtaccaaaaatcttttagccccagcacccatttcactgcaacatatgggggcag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ctctaagtaccaaaaatcttttagccccagcacccatttcactgcaacatatgggagcag 620
Query: 416 tttatagttttccctgtaggtcttttccccctacagagaatcagctcctgccccacctct 475
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 tttgtagttttccctgtaggtcttttcccccgacagagaatcagctcctgccccacctct 680
Query: 476 ctctctctctctctctctctctctctctc 504
|||||||||||||||||||||||||||||
Sbjct: 681 ctctctctctctctctctctctctctctc 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 922
Length adjustment: 10
Effective length of query: 507
Effective length of database: 912
Effective search space: 462384
Effective search space used: 462384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_i19.g1 MSMg01no462_i19.g1 CHROMAT_FILE:
MSMg01no462_i19.g1 PHD_FILE: MSMg01no462_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:36 2005
(470 letters)
>mm_chr10_24930182_24931054
Length = 873
Score = 872 bits (451), Expect = 0.0
Identities = 467/473 (98%), Gaps = 3/473 (0%)
Strand = Plus / Minus
Query: 1 tcttctgac-aaatcagctgtttgactaggatggagcggtgatagatcaccttgtgagtt 59
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 673 tcttctgacaaaatcagctgtttgactaggatggatcggtgatagatcaccttgtgagtt 614
Query: 60 gtttgtggagccttcaatttgaagtgtattttcaaaaagttaaaatgttgaactcccagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gtttgtggagccttcaatttgaagtgtattttcaaaaagttaaaatgttgaactcccagt 554
Query: 120 ttaaaaaaaaa--tacaaataaaattctgtacaggggagttggttttctttgtgtagcca 177
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttaaaaaaaaaattacaaataaaattctgtacaggggagttggttttctttgtgtagcca 494
Query: 178 ctgatagggtgatcattctccattggatggcagtgggtccaagagtatgtggacagtaca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctgatagggtgatcattctccattggatggcagtgggtccaagagtatgtggacagtaca 434
Query: 238 aattgtactttgtggtcttaaaacaagaaaaccaagaggatacaagttgggtgggagtag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aattgtactttgtggtcttaaaacaagaaaaccaagaggatacaagttgggtgggagtag 374
Query: 298 gctggtgagtgtgattaaaatatgtttatgaaattctcaaagaactaaaaataaaaacaa 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 373 gctggtgagtgtgattaaaatatgtttattaaattctcaaagaactaaaaataaaaacaa 314
Query: 358 tgcagggaattatataactgccaggagataaagctaaaaaccagcatttaaccatgaact 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgcagggaattatataactgccaggagataaagctaaaaaccagcatttaaccatgaact 254
Query: 418 cagatccattgtagtaatgtgcactgaacacacccaagatgggccatatcaac 470
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 253 cagatccattgtagtaatgttcactgaacacacccaagatgggccatatcaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 873
Length adjustment: 10
Effective length of query: 460
Effective length of database: 863
Effective search space: 396980
Effective search space used: 396980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
