BAC Information

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BAC

Clone NameMSMg01-462P21
Chromosome10 (Build37)
Map Location 52,553,800 - 52,554,216
singlet/doubletsinglet
Overlap geneSlc35f1
Upstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462P21.T7 (MSMg01no462_p21.b1)MSMg01-462P21.TJ (MSMg01no462_p21.g1)
ACCAG547749AG547750
length778794
length of high quality
(start - end)
461 (82 - 542)416 (82 - 497)
definitionCHROMAT_FILE: MSMg01no462_p21.b1 PHD_FILE: MSMg01no462_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:12 2005CHROMAT_FILE: MSMg01no462_p21.g1 PHD_FILE: MSMg01no462_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAAGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAAAC
CCGCGGAATTCAAAGGTTGTGCCTACATGAACAATGCTCTTTTTCAAGAT
TATTGTTTTTCTCTATGACAAAGTACACGCCAATGCTAAAGTTATTATCT
GTGCATTAAGTGTACCCTTCAATGACATTAACTATATTTGTACTGTGATG
CAGCCATTGTCACTATTGAGCTTCAGAAGTTTTCACCATTTTATTTGAAA
AATTTGCACCTATTGAACAAACAGCCTGTTCCACAATCTTCAGCCATAGG
ACATTAAGTGGAAGTTGAACCATCTATTCTTATTATTCTAAGCACCTAAC
ATGTGCAGAAGCATACATTATCTATTCTTTTGTACCTGACTGATTTTTTT
CATGCTTTCCAAGTTCATTATGCTGCCCCCGATGCCTCAGAACTTCATTC
ATTTTTAAAGCTGATATTTGTTATATATTTATTCAACGATAGACACTTGG
ATGTTTCCAACTTGGGGCGTTATAAATAATGCTGCGTATTCAATTATCAG
TTTGAAAGCTTTTATTCACTTTTTAAGGAGATGTATGCGGCAATAGAAAT
TGAAACTATCGAGGGTATACAAATGTATGTCATTGTCTATATAAGCCCTT
ACAATGTTTTTTAACCCCTACCGCAAAACCCTCAATTCAACTTCCCCACC
CCCATATATTGGCTCTATTACCAAATTGCTCTTCCACTATCTCCATATCT
CCACGAACGTTTTTTTTCTCTTACCATC
NCCCTCTCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTCTATTCTCTTTTCT
GCTCAGCCATTGGTTGATCAGCTTTTATTGACAAATTGGAGGATAAATGG
GAAGCAATGTTTATCAACATTGAGTCAGGAGATTCTTAGAATAAGCATTA
CAATGCCATGTCCAAATTGCAGTCAGATATGGGGCATGGAAATCAGCATT
TAAATAACAAAAGGATAATCTTTACACCATGCAGAATAACATTATGCCTA
CAGGAAAGGGGTAGACAGGAAGAAGAAAATGCAGGAACTAGAGTAGCTTC
AATGCCTGGTGGCAGTGCCTGGACATTCCTAAGTTATTGATGAAAGGCAT
ATTTATAAGGTACCTATATTGACCTGTGGCTGGCCATCAGCATATCAGAA
CTCTTAGTCATCTAGCACAGTGATAGGCTGTAGGGATATAGCTCCTGAGA
ATATTGAGTGTTTCCCTGGAGAACACTGAGTCTCATAAGAATGAAGACCA
ACAAGGGCTGCTCCCTACAAGGGTGCTTAACCACCTGGGTGATGGCTTAT
AAGCCACAACCCACTAGGAGAGGGTTATTTTTCTCCAAATCCCAACTTTC
AATTCCCCAAACTTGTGCCACCCCAATTTTATAGGAATGGATGGCCCCCC
TCCAATTTCTCTCTAAAGTGAAAATTATAAAGAACGGGTATAATTTAAAT
GTTCCTCTGACACGGTCCCTTAAGAAATCCACCCGTGACCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_p21.g1 MSMg01no462_p21.g1 CHROMAT_FILE:
MSMg01no462_p21.g1 PHD_FILE: MSMg01no462_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:12 2005
         (416 letters)



>mm_chr10_52553600_52554420
          Length = 821

 Score =  768 bits (397), Expect = 0.0
 Identities = 410/419 (97%), Gaps = 9/419 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattctattctcttttctgctcagccattggttgatcagcttttattgacaaattggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattctattctcttttctgctcagccattggttgatcagcttttattgacaaattggag 260

                                                                       
Query: 61  gataaatgggaagcaatgtttatcaacattgagtcaggagattcttagaataagcattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataaatgggaagcaatgtttatcaacattgagtcaggagattcttagaataagcattac 320

                                                                       
Query: 121 aatgccatgtccaaattgcagtcagatatggggcatggaaatcagcatttaaataacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgccatgtccaaattgcagtcagatatggggcatggaaatcagcatttaaataacaaa 380

                                                                       
Query: 181 aggataatctttacaccatgcagaataacattatgcctacaggaaaggggtagacaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggataatctttacaccatgcagaataacattatgcctacaggaaaggggtagacaggaa 440

                                                                       
Query: 241 gaagaaaatgcaggaactagagtagcttcaatgcctggtggcagtgcctggacattccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagaaaatgcaggaactagagtagcttcaatgcctggtggcagtgcctggacattccta 500

                                                                       
Query: 301 agttattgatgaaaggcatatttataaggtaccta-------tattgacctgtggctggc 353
           |||||||||||||||||||||||||||||||  ||       ||||||||||||||||||
Sbjct: 501 agttattgatgaaaggcatatttataaggta--taaggtatatattgacctgtggctggc 558

                                                                      
Query: 354 catcagcatatcagaactcttagtcatctagcacagtgataggctgtagggatatagct 412
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 catcagcatatcagaactcttagtcatctagcacagtgataggctgtagggatatagct 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 821
Length adjustment: 9
Effective length of query: 407
Effective length of database: 812
Effective search space:   330484
Effective search space used:   330484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)